RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 TRAPPC4Q9Y296 219 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 MEMO1Q9Y316 297 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 SAMHD1Q9Y3Z3 626 aaKnown RBP10.65□□□□□ -0.7
CUX1-210ENST00000497815 ZNF175Q9Y473 711 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 AP4S1Q9Y587 144 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 COL6A6A6NMZ7 2263 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 ZNF407Q9C0G0 2248 aa10.65□□□□□ -0.71
CUX1-210ENST00000497815 FAM208BQ5VWN6 2430 aa10.65□□□□□ -0.71
CUX1-210ENST00000497815 A0A1B0GUH1 482 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 CD8B2A6NJW9 211 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 ZNF814B7Z6K7 855 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 FTCDNL1E5RQL4 147 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 TNFRSF11BO00300 401 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 SMAD9O15198 467 aaKnown RBP10.64□□□□□ -0.71
CUX1-210ENST00000497815 OR2T1O43869 369 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 BGLAPP02818 100 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 HOXB6P17509 224 aaKnown RBP10.64□□□□□ -0.71
CUX1-210ENST00000497815 GRPRP30550 384 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 IST1P53990 364 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 PER3P56645 1201 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 NUP107P57740 925 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 IL1RL1Q01638 556 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 LTBQ06643 244 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 LAPTM4AQ15012 233 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 OTUD3Q5T2D3 398 aaPredicted RBP10.64□□□□□ -0.71
CUX1-210ENST00000497815 MBOAT2Q6ZWT7 520 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 FCRLAQ7L513 359 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 ADGRE4PQ86SQ3 457 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 CCDC103Q8IW40 242 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 MCEMP1Q8IX19 187 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 GCNT2Q8N0V5 402 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 LRRC17Q8N6Y2 441 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 TMEM99Q8N816 258 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 OR4K5Q8NGD3 323 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 ABHD3Q8WU67 409 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 WNT2BQ93097 391 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 BPIFA2Q96DR5 249 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 SGTBQ96EQ0 304 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 DHRS1Q96LJ7 313 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 NAA11Q9BSU3 229 aaPredicted RBP10.64□□□□□ -0.71
CUX1-210ENST00000497815 ASPNQ9BXN1 380 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 CALHM2Q9HA72 323 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 KLHL13Q9P2N7 655 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 CLEC4AQ9UMR7 237 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 LYVE1Q9Y5Y7 322 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 MED12Q93074 2177 aa10.64□□□□□ -0.71
CUX1-210ENST00000497815 SH3PXD2BA1X283 911 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 J3QKU1 62 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 M0R082 166 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 HNRNPRO43390 633 aaKnown RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 OR10H3O60404 316 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 EIF1BO60739 113 aaKnown RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 RAMP1O60894 148 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 E2F6O75461 281 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 KRT36O76013 467 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 OR7A10O76100 309 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 TOXO94900 526 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 PLGP00747 810 aaPredicted RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 FCGR2AP12318 317 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 FUT1P19526 365 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 MAKP20794 623 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 GPR4P46093 362 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 AGFG1P52594 562 aaKnown RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 ZNF74Q16587 644 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 C4orf17Q53FE4 359 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 MAMDC2Q7Z304 686 aaPredicted RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 CDK20Q8IZL9 346 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 OR4C15Q8NGM1 316 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 ZNF417Q8TAU3 575 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 PIGXQ8TBF5 258 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 RNF128Q8TEB7 428 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 LRTOMTQ8WZ04 291 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 STMN2Q93045 179 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 INTS12Q96CB8 462 aaKnown RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 DUS3LQ96G46 650 aaKnown RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 FAM46AQ96IP4 442 aaKnown RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 DMRTA2Q96SC8 542 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 ZNF587Q96SQ5 575 aaPredicted RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 TM9SF2Q99805 663 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 FUZQ9BT04 418 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 ARMC1Q9NVT9 282 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 DNAJB9Q9UBS3 223 aa10.63□□□□□ -0.71
CUX1-210ENST00000497815 PRRC2CQ9Y520 2896 aaKnown RBP10.63□□□□□ -0.71
CUX1-210ENST00000497815 MBD3L4A6NDZ8 208 aaPredicted RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 MBD3L3A6NE82 208 aaPredicted RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 MBD3L5A6NJ08 208 aaPredicted RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 AQP7P3A6NL99 342 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 EFCAB9A8MZ26 197 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 CLOCKO15516 846 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 DNPH1O43598 174 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 RRP9O43818 475 aaKnown RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 CCNB2O95067 398 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 MT-ATP6P00846 226 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 LDLRP01130 860 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 IL2RAP01589 272 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 HIST1H2ABP04908 130 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 SAGP10523 405 aaPredicted RBP10.62□□□□□ -0.71
CUX1-210ENST00000497815 FASP25445 335 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 LIMS1P48059 325 aa10.62□□□□□ -0.71
CUX1-210ENST00000497815 SIRPAP78324 504 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms