RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 MADCAM1Q13477 382 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 PCOLCEQ15113 449 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.8■□□□□ 0.92
USF3-203ENST00000491165 TRIQKQ629K1 86 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 CNIH2Q6PI25 160 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 ARIH2OSQ8N7S6 290 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 APCDD1LQ8NCL9 501 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 NFAM1Q8NET5 270 aaPredicted RBP20.8■□□□□ 0.92
USF3-203ENST00000491165 LILRB4Q8NHJ6 448 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 ZNF578Q96N58 590 aaPredicted RBP20.8■□□□□ 0.92
USF3-203ENST00000491165 PELOQ9BRX2 385 aaKnown RBP20.8■□□□□ 0.92
USF3-203ENST00000491165 TTYH2Q9BSA4 534 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 IL20Q9NYY1 176 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 NUFIP1Q9UHK0 495 aaKnown RBP20.8■□□□□ 0.92
USF3-203ENST00000491165 ZNF223Q9UK11 482 aaPredicted RBP20.8■□□□□ 0.92
USF3-203ENST00000491165 HLA-DQB1P01920 261 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 GAAP10253 952 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 COX6A1P12074 109 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 APEX1P27695 318 aaKnown RBP20.8■□□□□ 0.92
USF3-203ENST00000491165 OTX2P32243 289 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 GPR4P46093 362 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 SLC37A1P57057 533 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 ACSM1Q08AH1 577 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 PGGHGQ32M88 737 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 METAP1DQ6UB28 335 aaPredicted RBP20.8■□□□□ 0.92
USF3-203ENST00000491165 NKAIN4Q8IVV8 208 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 C19orf18Q8NEA5 215 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 OR11G2Q8NGC1 345 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 SOSTQ9BQB4 213 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 NUDT9Q9BW91 350 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 ACTRT3Q9BYD9 372 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 OR10A5Q9H207 317 aa20.8■□□□□ 0.92
USF3-203ENST00000491165 EXOGQ9Y2C4 368 aaKnown RBP20.8■□□□□ 0.92
USF3-203ENST00000491165 IGHV1-45A0A0A0MS14 117 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 HPGDSO60760 199 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 WT1P19544 449 aaPredicted RBP20.79■□□□□ 0.92
USF3-203ENST00000491165 HOXC5Q00444 222 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 ZNF155Q12901 538 aaPredicted RBP20.79■□□□□ 0.92
USF3-203ENST00000491165 UBE2J2Q8N2K1 259 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 Q8N402 240 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 SLC16A11Q8NCK7 471 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 C16orf52Q8NHV5 167 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 NEIL3Q8TAT5 605 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 ATF6BQ99941 703 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 HDHD5Q9BXW7 423 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 PPP1R3EQ9H7J1 279 aa20.79■□□□□ 0.92
USF3-203ENST00000491165 RANGRFQ9HD47 186 aaPredicted RBP20.79■□□□□ 0.92
USF3-203ENST00000491165 ZZEF1O43149 2961 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 A0A0B4J293 547 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 A6NL46 340 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 TLX3O43711 291 aaPredicted RBP20.78■□□□□ 0.92
USF3-203ENST00000491165 IGHA1P01876 353 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 CELA2AP08217 269 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 CYC1P08574 325 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 CELP19835 753 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 HTR1FP30939 366 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 MAP2K3P46734 347 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 CLN3Q13286 438 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 SSPNQ14714 243 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 ZNF620Q6ZNG0 422 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 NRMQ8IXM6 262 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 OR52N1Q8NH53 320 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 OR14A16Q8NHC5 309 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 UBASH3BQ8TF42 649 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 DAZLQ92904 295 aaKnown RBP20.78■□□□□ 0.92
USF3-203ENST00000491165 MS4A4EQ96PG1 132 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 DCLRE1CQ96SD1 692 aaKnown RBP20.78■□□□□ 0.92
USF3-203ENST00000491165 MCHR1Q99705 422 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 NTNG1Q9Y2I2 539 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 GABRPO00591 440 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 YES1P07947 543 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 CD63P08962 238 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 PTBP1P26599 531 aaKnown RBP eCLIP20.78■□□□□ 0.92
USF3-203ENST00000491165 HOXD11P31277 338 aaPredicted RBP20.78■□□□□ 0.92
USF3-203ENST00000491165 ZNF791Q3KP31 576 aaPredicted RBP20.78■□□□□ 0.92
USF3-203ENST00000491165 MFSD12Q6NUT3 480 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 PLET1Q6UQ28 207 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 MBOAT2Q6ZWT7 520 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 GDF7Q7Z4P5 450 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 OR1N1Q8NGS0 311 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 ADAMTS17Q8TE56 1095 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 ADAMTS15Q8TE58 950 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 SLC41A3Q96GZ6 507 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 RNF170Q96K19 258 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 LPAR4Q99677 370 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 POLHQ9Y253 713 aa20.78■□□□□ 0.92
USF3-203ENST00000491165 KLF4O43474 513 aa20.77■□□□□ 0.92
USF3-203ENST00000491165 OR5F1O95221 314 aa20.77■□□□□ 0.92
USF3-203ENST00000491165 ZIC2O95409 532 aaPredicted RBP20.77■□□□□ 0.92
USF3-203ENST00000491165 CFL1P23528 166 aaKnown RBP20.77■□□□□ 0.92
USF3-203ENST00000491165 HLA-DMAP28067 261 aa20.77■□□□□ 0.92
USF3-203ENST00000491165 ATP6V1E1P36543 226 aa20.77■□□□□ 0.92
USF3-203ENST00000491165 C1QTNF12Q5T7M4 302 aa20.77■□□□□ 0.92
USF3-203ENST00000491165 ATP1A1-AS1Q5TC04 95 aa20.77■□□□□ 0.92
USF3-203ENST00000491165 MZT2AQ6P582 158 aa20.77■□□□□ 0.92
USF3-203ENST00000491165 NOXA1Q86UR1 476 aa20.77■□□□□ 0.92
USF3-203ENST00000491165 C9orf40Q8IXQ3 194 aa20.77■□□□□ 0.92
USF3-203ENST00000491165 SPRYD4Q8WW59 207 aaPredicted RBP20.77■□□□□ 0.92
USF3-203ENST00000491165 ZC3HAV1LQ96H79 300 aaKnown RBP20.77■□□□□ 0.92
USF3-203ENST00000491165 TMEM246Q9BRR3 403 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms