RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 HMGB4Q8WW32 186 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.44■□□□□ 0.22
VIM-206ENST00000487938 SLC25A18Q9H1K4 315 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 NOX4Q9NPH5 578 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 OR10H1Q9Y4A9 318 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 NUBP2Q9Y5Y2 271 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 A0A087WUJ7 227 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 CT45A8P0DMV1 189 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 CT45A9P0DMV2 189 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 SPI1P17947 270 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 MAOAP21397 527 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 CAPZA2P47755 286 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 GPR143P51810 404 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 PITPNAQ00169 270 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 CT45A2Q5DJT8 189 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 C9orf62Q8N4C0 152 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 MOSPD2Q8NHP6 518 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 HAVCR2Q8TDQ0 301 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 GCDHQ92947 438 aaPredicted RBP16.44■□□□□ 0.22
VIM-206ENST00000487938 OR51J1Q9H342 316 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 ZCCHC4Q9H5U6 513 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 AUNIPQ9H7T9 357 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 NRIP3Q9NQ35 241 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 C2orf42Q9NWW7 574 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 SLCO1C1Q9NYB5 712 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 MSRAQ9UJ68 235 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 ERVK-19Q9WJR5 959 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 PIAS3Q9Y6X2 628 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 A0A087WV48 116 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 ACOD1A6NK06 481 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 NPIPB9F8W1W9 429 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 BLOC1S5-TXNDC5H3BN57 136 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 PIN1P1O15428 100 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 GABRG2P18507 467 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 SRMP19623 302 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 EIF2B5Q13144 721 aaKnown RBP16.43■□□□□ 0.22
VIM-206ENST00000487938 GGTLC2Q14390 218 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 GAS6Q14393 721 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 DPY19L2P2Q6ZN68 376 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 CMTM4Q8IZR5 234 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 ZNF687Q8N1G0 1237 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 ARHGEF39Q8N4T4 335 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 ZNF433Q8N7K0 673 aaPredicted RBP16.43■□□□□ 0.22
VIM-206ENST00000487938 BCORP1Q8N888 145 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 DACT3Q96B18 629 aaPredicted RBP16.43■□□□□ 0.22
VIM-206ENST00000487938 LMF1Q96S06 567 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 SEMA6CQ9H3T2 930 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 EVA1AQ9H8M9 152 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 Q9N2J8 555 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 CLEC1BQ9P126 229 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 SPATA2Q9UM82 520 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 ING4Q9UNL4 249 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 HS3ST3A1Q9Y663 406 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 C7orf66A4D0T2 115 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 FAM221BA6H8Z2 402 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 TRABD2BA6NFA1 517 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 FOXS1O43638 330 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 SEMA4FO95754 770 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 WNT1P04628 370 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 IFI6P09912 130 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 CTSEP14091 401 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 LGALS3BPQ08380 585 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 HACD4Q5VWC8 232 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 CREB3L2Q70SY1 520 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 OVCH1Q7RTY7 1134 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 PARGQ86W56 976 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 SLITRK4Q8IW52 837 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 OR7G1Q8NGA0 311 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 C16orf52Q8NHV5 167 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 DGAT2Q96PD7 388 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 TSSK2Q96PF2 358 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 DDOQ99489 341 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 S1PR5Q9H228 398 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 PRTFDC1Q9NRG1 225 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 STMN3Q9NZ72 180 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 MGAT4AQ9UM21 535 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 CAMK2AQ9UQM7 478 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 VCANP13611 3396 aa16.43■□□□□ 0.22
VIM-206ENST00000487938 KIR2DS5A0A0G2JLQ3 304 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 A0A0G2JNG1 304 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 SERINC4A6NH21 518 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 B4DGG1 531 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 KIR2DS3K7RE56 304 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 CTNSO60931 367 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 RNH1P13489 461 aaKnown RBP16.42■□□□□ 0.22
VIM-206ENST00000487938 SNTB2Q13425 540 aaKnown RBP16.42■□□□□ 0.22
VIM-206ENST00000487938 KIR2DS5Q14953 304 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 SERPINA12Q8IW75 414 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 ZNF431Q8TF32 576 aaPredicted RBP16.42■□□□□ 0.22
VIM-206ENST00000487938 GFI1Q99684 422 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 G6PC3Q9BUM1 346 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 TRAF4Q9BUZ4 470 aaPredicted RBP16.42■□□□□ 0.22
VIM-206ENST00000487938 GON4LQ3T8J9 2241 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 PRR32B1ATL7 298 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 GATBO75879 557 aaKnown RBP16.42■□□□□ 0.22
VIM-206ENST00000487938 OR7A10O76100 309 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 RABIFP47224 123 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 CLDN12P56749 244 aa16.42■□□□□ 0.22
VIM-206ENST00000487938 NANOS3P60323 173 aaKnown RBP16.42■□□□□ 0.22
VIM-206ENST00000487938 LEG1Q6P5S2 330 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms