RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 NCKAP5O14513 1909 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 HEATR5AQ86XA9 2040 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 NAV3Q8IVL0 2385 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 PDLIM1O00151 329 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 EI24O14681 340 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 HCRTR2O43614 444 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 CCNB2O95067 398 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 LINGO3P0C6S8 592 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 PEPDP12955 493 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 ZNF708P17019 499 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 HTR2AP28223 471 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 HOXC5Q00444 222 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 ZNF117Q03924 483 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 PPP1R8Q12972 351 aaKnown RBP15.31■□□□□ 0.04
VIM-205ENST00000485947 NDUFAF6Q330K2 333 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 FGD3Q5JSP0 725 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 SWT1Q5T5J6 900 aaKnown RBP15.31■□□□□ 0.04
VIM-205ENST00000485947 IZUMO2Q6UXV1 221 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 TSPYL5Q86VY4 417 aaPredicted RBP15.31■□□□□ 0.04
VIM-205ENST00000485947 OR2M3Q8NG83 312 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 RNASE6Q93091 150 aaKnown RBP15.31■□□□□ 0.04
VIM-205ENST00000485947 SLC38A4Q969I6 547 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 ARSGQ96EG1 525 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 RDH12Q96NR8 316 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 ALPK1Q96QP1 1244 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 TRIB1Q96RU8 372 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 SLC29A1Q99808 456 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 FUZQ9BT04 418 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 RTN4RQ9BZR6 473 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 MAN2C1Q9NTJ4 1040 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 PDP1Q9P0J1 537 aaPredicted RBP15.31■□□□□ 0.04
VIM-205ENST00000485947 RHCGQ9UBD6 479 aa15.31■□□□□ 0.04
VIM-205ENST00000485947 INTS1Q8N201 2190 aaKnown RBP15.31■□□□□ 0.04
VIM-205ENST00000485947 A0A0B4J2E0 115 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 A0A1B0GX12 115 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 CHP2O43745 196 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 RCBTB2O95199 551 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 CRHP06850 196 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 FREM3P0C091 2139 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 ANXA8P13928 327 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 PGCP20142 388 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 LHX2P50458 406 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 HCFC1P51610 2035 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 PPP2R2BQ00005 443 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 CBFBQ13951 182 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 RFX4Q33E94 735 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 OTUD3Q5T2D3 398 aaPredicted RBP15.3■□□□□ 0.04
VIM-205ENST00000485947 WBP2NLQ6ICG8 309 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 ARSKQ6UWY0 536 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 KIF18BQ86Y91 864 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 OR10G2Q8NGC3 310 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 OR52J3Q8NH60 311 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 OR5W2Q8NH69 310 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 B4GALNT2Q8NHY0 566 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 DNAJA4Q8WW22 397 aaPredicted RBP15.3■□□□□ 0.04
VIM-205ENST00000485947 DNAJC9Q8WXX5 260 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 MPP4Q96JB8 637 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 ZNF184Q99676 751 aaPredicted RBP15.3■□□□□ 0.04
VIM-205ENST00000485947 TACO1Q9BSH4 297 aaKnown RBP15.3■□□□□ 0.04
VIM-205ENST00000485947 SFXN3Q9BWM7 321 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 DSN1Q9H410 356 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 CTPS2Q9NRF8 586 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 SELENONQ9NZV5 590 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 SLC7A7Q9UM01 511 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 ICAM5Q9UMF0 924 aa15.3■□□□□ 0.04
VIM-205ENST00000485947 A0A087WZY1 265 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 A0A1B0GWA3 101 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 OIP5O43482 229 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 ADAM11O75078 769 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 GOSR1O95249 250 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 ALPLP05186 524 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 BMP5P22003 454 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 PCYT1AP49585 367 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 CCR4P51679 360 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 CLDN18P56856 261 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 OR2A2Q6IF42 318 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 FAHD1Q6P587 224 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 ULK3Q6PHR2 472 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 POMZP3Q6PJE2 187 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 TBPL2Q6SJ96 375 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 CBLN3Q6UW01 205 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 HS3ST5Q8IZT8 346 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 GALNT4Q8N4A0 578 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 NAXEQ8NCW5 288 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 SLC7A13Q8TCU3 470 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 MAGEE2Q8TD90 523 aaPredicted RBP15.29■□□□□ 0.04
VIM-205ENST00000485947 DUSP19Q8WTR2 217 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 ACOT11Q8WXI4 607 aaPredicted RBP15.29■□□□□ 0.04
VIM-205ENST00000485947 HS6ST2Q96MM7 605 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 TUBA1CQ9BQE3 449 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 PIGQQ9BRB3 760 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 PRR14Q9BWN1 585 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 C12orf10Q9HB07 376 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 KRCC1Q9NPI7 259 aaPredicted RBP15.29■□□□□ 0.04
VIM-205ENST00000485947 KIF17Q9P2E2 1029 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 ORC6Q9Y5N6 252 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 CCDC168Q8NDH2 2452 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 ARHGAP21Q5T5U3 1957 aa15.29■□□□□ 0.04
VIM-205ENST00000485947 TRBV4-1A0A0J9YWV2 114 aa15.28■□□□□ 0.04
VIM-205ENST00000485947 SH3PXD2BA1X283 911 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms