RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 IFI6P09912 130 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 PAICSP22234 425 aaKnown RBP13.2□□□□□ -0.3
CHD3-211ENST00000481999 RORAP35398 523 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 SLC16A1P53985 500 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 MRPS15P82914 257 aaKnown RBP13.2□□□□□ -0.3
CHD3-211ENST00000481999 INSL4Q14641 139 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 QPRTQ15274 297 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 ELAVL1Q15717 326 aaKnown RBP13.2□□□□□ -0.3
CHD3-211ENST00000481999 KLHL12Q53G59 568 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 OR5M10Q6IEU7 315 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 FAM199XQ6PEV8 388 aaPredicted RBP13.2□□□□□ -0.3
CHD3-211ENST00000481999 MARCH3Q86UD3 253 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 KLBQ86Z14 1044 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 GRAMD2AQ8IUY3 354 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 OR52L1Q8NGH7 329 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 OR51L1Q8NGJ5 315 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 OR51G2Q8NGK0 314 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 IFI44Q8TCB0 444 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 SLC7A6Q92536 515 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 TP53INP1Q96A56 240 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 LCORQ96JN0 433 aaPredicted RBP13.2□□□□□ -0.3
CHD3-211ENST00000481999 ZNF426Q9BUY5 554 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 FN3KQ9H479 309 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 MCCC2Q9HCC0 563 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 MMACHCQ9Y4U1 282 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 CACNA1HO95180 2353 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 FAM47E-STBD1D6RA91 191 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 J3QRE1 110 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 HPGDSO60760 199 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 FMO6PO60774 539 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 TCEA1P23193 301 aaKnown RBP13.19□□□□□ -0.3
CHD3-211ENST00000481999 APEX1P27695 318 aaKnown RBP13.19□□□□□ -0.3
CHD3-211ENST00000481999 HOXA6P31267 233 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 EVX1P49640 407 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.19□□□□□ -0.3
CHD3-211ENST00000481999 RNF113BQ8IZP6 322 aaKnown RBP13.19□□□□□ -0.3
CHD3-211ENST00000481999 ACBD7Q8N6N7 88 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 LSMEM1Q8N8F7 131 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 PTP4A1Q93096 173 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 C3orf49Q96BT1 292 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 ART5Q96L15 291 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 OR51V1Q9H2C8 321 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 MARCH7Q9H992 704 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 ADAM30Q9UKF2 790 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 PCDHGB7Q9Y5F8 929 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 NUP210LQ5VU65 1888 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 IDSB3KWA1 339 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 BMP7P18075 431 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 KIR2DL3P43628 341 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 PPICP45877 212 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 MAP2K3P46734 347 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 FOXK2Q01167 660 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 RIN1Q13671 783 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.19□□□□□ -0.3
CHD3-211ENST00000481999 RHBDD2Q6NTF9 364 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 MZT2BQ6NZ67 158 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 KCNN2Q9H2S1 579 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 SDK2Q58EX2 2172 aa13.19□□□□□ -0.3
CHD3-211ENST00000481999 A8MV72 311 aaPredicted RBP13.18□□□□□ -0.3
CHD3-211ENST00000481999 ZNF28P17035 718 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 CLDN6P56747 220 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 SKP2Q13309 424 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 IL18Q14116 193 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 NKAIN1Q4KMZ8 207 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 FNDC7Q5VTL7 733 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 VASNQ6EMK4 673 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 NIPAL3Q6P499 406 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 ULK3Q6PHR2 472 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 PLET1Q6UQ28 207 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 MAMSTRQ6ZN01 415 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 TMPRSS11FQ6ZWK6 438 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 MEPCEQ7L2J0 689 aaKnown RBP13.18□□□□□ -0.3
CHD3-211ENST00000481999 DMRTB1Q96MA1 342 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 ZNF578Q96N58 590 aaPredicted RBP13.18□□□□□ -0.3
CHD3-211ENST00000481999 SLC46A1Q96NT5 459 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 WWTR1Q9GZV5 400 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 UBQLN4Q9NRR5 601 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 BABAM2Q9NXR7 383 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 RPS6KB2Q9UBS0 482 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 AHCTF1Q8WYP5 2266 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 CACNA1CQ13936 2221 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 IGKV1D-42A0A075B6H8 117 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 CD8B2A6NJW9 211 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 C12orf71A8MTZ7 269 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 MCIDASD6RGH6 385 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 SLC19A2O60779 497 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 RGS9O75916 674 aaPredicted RBP13.18□□□□□ -0.3
CHD3-211ENST00000481999 IL33O95760 270 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 PRKAR1AP10644 381 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 CD8BP10966 210 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 ABCD3P28288 659 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 CRMP1Q14194 572 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 CCDC157Q569K6 752 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 RPL13AP3Q6NVV1 102 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 OR7G1Q8NGA0 311 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 ACOT12Q8WYK0 555 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 ZC3HAV1LQ96H79 300 aaKnown RBP13.18□□□□□ -0.3
CHD3-211ENST00000481999 MOGAT1Q96PD6 335 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 TRIM2Q9C040 744 aa13.18□□□□□ -0.3
CHD3-211ENST00000481999 RBFOX1Q9NWB1 397 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms