RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZNF385AQ96PM9 386 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 PAIP1Q9H074 479 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 ALG2Q9H553 416 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 RMND5AQ9H871 391 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 PARPBPQ9NWS1 579 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 MGAT4BQ9UQ53 548 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 FAM234BA2RU67 622 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 FRS3O43559 492 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 NUDT7P0C024 238 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 PPP2R2BQ00005 443 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 C6orf10Q5SRN2 563 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 KLHL17Q6TDP4 642 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 EPGNQ6UW88 154 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 SERPINA11Q86U17 422 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 MIER2Q8N344 545 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 C17orf78Q8N4C9 275 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 C1QTNF6Q9BXI9 259 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 REG4Q9BYZ8 158 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 UPB1Q9UBR1 384 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 PRDM4Q9UKN5 801 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 B3GALT5Q9Y2C3 310 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 PCDHB14Q9Y5E9 798 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 USH1CQ9Y6N9 552 aa16.48■□□□□ 0.23
CCDC88B-206ENST00000473405 A0A0G2JPF8 293 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 A8MVM7 634 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 KIAA1324LA8MWY0 1029 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 TMEM229AB2RXF0 380 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 HNRNPCL2B2RXH8 293 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 HNRNPCL3B7ZW38 293 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 M0R1B8 84 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 HNRNPCL1O60812 293 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 NPIPB7O75200 414 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 HNRNPCL4P0DMR1 293 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 TTKP33981 857 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 COPZ1P61923 177 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 IRX1P78414 480 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 LARS2Q15031 903 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 RGNQ15493 299 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 AGAP6Q5VW22 663 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 SLC2A7Q6PXP3 512 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 SLC22A25Q6T423 547 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 GPAT4Q86UL3 456 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 MAL2Q969L2 176 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 C3orf49Q96BT1 292 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 HS6ST2Q96MM7 605 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 DHRS9Q9BPW9 319 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 SF3B5Q9BWJ5 86 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 SPATA9Q9BWV2 254 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 CACNG6Q9BXT2 260 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 RSPO3Q9BXY4 272 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 A4GALTQ9NPC4 353 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 SLC17A5Q9NRA2 495 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 THUMPD1Q9NXG2 353 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 ADAM21Q9UKJ8 722 aa16.47■□□□□ 0.23
CCDC88B-206ENST00000473405 ARFGEF3Q5TH69 2177 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 BMP2P12643 396 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 MPGP29372 298 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 MRPL19P49406 292 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 DMTNQ08495 405 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 ZSWIM7Q19AV6 140 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 C1orf140Q5VVS0 124 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 BARX1Q9HBU1 254 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 BCL2L10Q9HD36 194 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 ADPRHL2Q9NX46 363 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 SLC25A37Q9NYZ2 338 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 POU2F3Q9UKI9 436 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 AMDHD2Q9Y303 409 aa16.46■□□□□ 0.23
CCDC88B-206ENST00000473405 CLIC1O00299 241 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 ERLIN1O75477 346 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 NCF2P19878 526 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 HOXC5Q00444 222 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 TGFBR3Q03167 851 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 LGALS3BPQ08380 585 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 FADDQ13158 208 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 NRF1Q16656 503 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 PRAMEF8Q5VWM4 474 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 PRAMEF7Q5VXH5 474 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 AAED1Q7RTV5 226 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 FUNDC1Q8IVP5 155 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 MSRB3Q8IXL7 192 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 MUC15Q8N387 334 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 POMGNT2Q8NAT1 580 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 BOD1Q96IK1 185 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 C7orf26Q96N11 449 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 PIF1Q9H611 641 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 CBLN4Q9NTU7 201 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 ZNF232Q9UNY5 417 aa16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 YLPM1P49750 1951 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-206ENST00000473405 A0A096LNT2 108 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 A0A096LPI6 279 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 TMEM247A6NEH6 219 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 FTCDNL1E5RQL4 147 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 SSX4O60224 188 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 HIKESHIQ53FT3 197 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 ZNF311Q5JNZ3 666 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 COMTD1Q86VU5 262 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 C10orf111Q8N326 155 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 EBF4Q9BQW3 602 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 PTDSS2Q9BVG9 487 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 TAPBPLQ9BX59 468 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms