RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HSPA12BQ96MM6 686 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 LMAN1LQ9HAT1 526 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 FBXL21Q9UKT6 434 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 MTCH2Q9Y6C9 303 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 TRBV2A0A0J9YWF9 115 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 TEX13CA0A0J9YWL9 993 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 GPANK1O95872 356 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 CD3GP09693 182 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 PRKAR1AP10644 381 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 RBM34P42696 430 aaKnown RBP17.45■□□□□ 0.38
VIM-203ENST00000469543 RPS5P46782 204 aaKnown RBP17.45■□□□□ 0.38
VIM-203ENST00000469543 GDI2P50395 445 aaKnown RBP17.45■□□□□ 0.38
VIM-203ENST00000469543 GPR176Q14439 515 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 PON3Q15166 354 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 PRSS45Q7RTY3 260 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 ZNF550Q7Z398 422 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 TSTD1Q8NFU3 115 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 ELF4Q99607 663 aaPredicted RBP17.45■□□□□ 0.38
VIM-203ENST00000469543 MESP1Q9BRJ9 268 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 G6PC3Q9BUM1 346 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 HAO2Q9NYQ3 351 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 CNTRLQ7Z7A1 2325 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 A0A1B0GTH9 108 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 OR6C70A6NIJ9 312 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 FZD7O75084 574 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 ADRB1P08588 477 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 SPI1P17947 270 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 SIRPAP78324 504 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 KLHL26Q53HC5 615 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 VWA2Q5GFL6 755 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 SLC35F2Q8IXU6 374 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 YIPF7Q8N8F6 280 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 DERL3Q96Q80 235 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 GAL3ST4Q96RP7 486 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 GDF15Q99988 308 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 SRA1Q9HD15 236 aaKnown RBP17.44■□□□□ 0.38
VIM-203ENST00000469543 ACOD1A6NK06 481 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 RPP14O95059 124 aaKnown RBP17.44■□□□□ 0.38
VIM-203ENST00000469543 GAAP10253 952 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 HPGDP15428 266 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 NANOS3P60323 173 aaKnown RBP17.44■□□□□ 0.38
VIM-203ENST00000469543 IGLV3-21P80748 117 aaPredicted RBP17.44■□□□□ 0.38
VIM-203ENST00000469543 EGR4Q05215 589 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 LTBQ06643 244 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 CEP78Q5JTW2 689 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 C1QL3Q5VWW1 255 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 CEP76Q8TAP6 659 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 RNF170Q96K19 258 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 CNN2Q99439 309 aaKnown RBP17.44■□□□□ 0.38
VIM-203ENST00000469543 TMEM246Q9BRR3 403 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 TRAV6A0A075B6T7 132 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 IGLV3-19P01714 112 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 RAB3BP20337 219 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 NRG3P56975 720 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 TOMM34Q15785 309 aaPredicted RBP17.44■□□□□ 0.38
VIM-203ENST00000469543 STPG1Q5TH74 334 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 PMM1Q92871 262 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 FOXN4Q96NZ1 517 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 DDOQ99489 341 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 SLC25A18Q9H1K4 315 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 ABCG5Q9H222 651 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 MOV10Q9HCE1 1003 aaKnown RBP17.44■□□□□ 0.38
VIM-203ENST00000469543 NRIP3Q9NQ35 241 aa17.44■□□□□ 0.38
VIM-203ENST00000469543 TMEM131Q92545 1883 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 ASCC3Q8N3C0 2202 aaKnown RBP17.43■□□□□ 0.38
VIM-203ENST00000469543 SLC19A2O60779 497 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 CD38P28907 300 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 FASLGP48023 281 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 PITPNBP48739 271 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 CLDN12P56749 244 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 LEG1Q6P5S2 330 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 METAP1DQ6UB28 335 aaPredicted RBP17.43■□□□□ 0.38
VIM-203ENST00000469543 SHISA6Q6ZSJ9 500 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 LRRC28Q86X40 367 aaPredicted RBP17.43■□□□□ 0.38
VIM-203ENST00000469543 DUSP18Q8NEJ0 188 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 KTI12Q96EK9 354 aaPredicted RBP17.43■□□□□ 0.38
VIM-203ENST00000469543 BRD7Q9NPI1 651 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 INPP5EQ9NRR6 644 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 MCUBQ9NWR8 336 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 ING1Q9UK53 422 aaPredicted RBP17.43■□□□□ 0.38
VIM-203ENST00000469543 KHNYNO15037 678 aaKnown RBP17.43■□□□□ 0.38
VIM-203ENST00000469543 GALP22466 123 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 EDNRAP25101 427 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 CSNK1EP49674 416 aaKnown RBP17.43■□□□□ 0.38
VIM-203ENST00000469543 CDK5R1Q15078 307 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 TSPAN10Q9H1Z9 355 aaPredicted RBP17.43■□□□□ 0.38
VIM-203ENST00000469543 KLHDC2Q9Y2U9 406 aa17.43■□□□□ 0.38
VIM-203ENST00000469543 ELOA3DA6NLF2 546 aaPredicted RBP17.42■□□□□ 0.38
VIM-203ENST00000469543 EVI2BP34910 448 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 TALDO1P37837 337 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 GPR143P51810 404 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 SLC37A1P57057 533 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 OR1D5P58170 312 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 ZP2Q05996 745 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 ELOCQ15369 112 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 ODF4Q2M2E3 257 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 ELOA3BQ3SY89 546 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 MZT2BQ6NZ67 158 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 SYT13Q7L8C5 426 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 ELOA3Q8NG57 546 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms