RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 AMDHD2Q9Y303 409 aa14.55□□□□□ -0.08
CCDC28B-204ENST00000469003 A0A0G2JPF8 293 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 TMEM247A6NEH6 219 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 AQP7P3A6NL99 342 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 HNRNPCL2B2RXH8 293 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 HNRNPCL3B7ZW38 293 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 M0R1B8 84 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 KLF11O14901 512 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 HNRNPCL1O60812 293 aaKnown RBP14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 AKR7A3O95154 331 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 HNRNPCL4P0DMR1 293 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 PTNP21246 168 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 MPGP29372 298 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 TTKP33981 857 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 TGFBR3Q03167 851 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 DMTNQ08495 405 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 RPS26P11Q5JNZ5 115 aaPredicted RBP14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 C6orf10Q5SRN2 563 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 C9orf135Q5VTT2 229 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 C11orf71Q6IPW1 123 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 MIER2Q8N344 545 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 CLIP4Q8N3C7 705 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 ZIC4Q8N9L1 334 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 OR9K2Q8NGE7 335 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 OR9I1Q8NGQ6 314 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 TMEM19Q96HH6 336 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 ADAD1Q96M93 576 aaKnown RBP14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 SPATA9Q9BWV2 254 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 TAPBPLQ9BX59 468 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 ARMC7Q9H6L4 198 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 CACYBPQ9HB71 228 aaKnown RBP14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 SLC17A5Q9NRA2 495 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 CBLN4Q9NTU7 201 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 ZNF232Q9UNY5 417 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 NBEAL1Q6ZS30 2694 aa14.54□□□□□ -0.08
CCDC28B-204ENST00000469003 FAM234BA2RU67 622 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 A8MVM7 634 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 ERLIN1O75477 346 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 BNIP2Q12982 314 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 B3GLCTQ6Y288 498 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 AAED1Q7RTV5 226 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 FBXL14Q8N1E6 418 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 MUC15Q8N387 334 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 POMGNT2Q8NAT1 580 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 VPS33AQ96AX1 596 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 ZNF385AQ96PM9 386 aaKnown RBP14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 C1QTNF6Q9BXI9 259 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 CACNG6Q9BXT2 260 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 IFT52Q9Y366 437 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 CHST2Q9Y4C5 530 aa14.53□□□□□ -0.08
CCDC28B-204ENST00000469003 FBN1P35555 2871 aaKnown RBP14.52□□□□□ -0.08
CCDC28B-204ENST00000469003 PLCE1Q9P212 2302 aa14.52□□□□□ -0.08
CCDC28B-204ENST00000469003 A0A096LPI6 279 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 FRS3O43559 492 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 CRLF1O75462 422 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 PRG2P13727 222 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 NCF2P19878 526 aaPredicted RBP14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 FABP6P51161 128 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 P2RY4P51582 365 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 IRX1P78414 480 aaPredicted RBP14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 SLC25A3Q00325 362 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 RGNQ15493 299 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 C1orf140Q5VVS0 124 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 PRAMEF8Q5VWM4 474 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 PRAMEF7Q5VXH5 474 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 TMEM225Q6GV28 225 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 ZNF544Q6NX49 715 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 ABHD12BQ7Z5M8 362 aaPredicted RBP14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 SERPINA11Q86U17 422 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 GPAT4Q86UL3 456 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 GTF2H4Q92759 462 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 C3orf49Q96BT1 292 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 BOD1Q96IK1 185 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 PAIP1Q9H074 479 aaKnown RBP14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 RAD21L1Q9H4I0 556 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 FKRPQ9H9S5 495 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 BCL2L10Q9HD36 194 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 ADPRHL2Q9NX46 363 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 PCDHB14Q9Y5E9 798 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 USH1CQ9Y6N9 552 aa14.52□□□□□ -0.09
CCDC28B-204ENST00000469003 HEATR1Q9H583 2144 aaKnown RBP14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 CHD3Q12873 2000 aaKnown RBP14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 TMEM229AB2RXF0 380 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 CLIC1O00299 241 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 SSX4O60224 188 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 NPIPB7O75200 414 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 VAMP5O95183 116 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 TP53P04637 393 aaPredicted RBP14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 BMP2P12643 396 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 MRPL19P49406 292 aaKnown RBP14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 NUDT6P53370 316 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 PRPS1P60891 318 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 FADDQ13158 208 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 ZNF311Q5JNZ3 666 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 BEND6Q5SZJ8 279 aaPredicted RBP14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 KLHL24Q6TFL4 600 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 EPGNQ6UW88 154 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 STK35Q8TDR2 534 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 SLC35B4Q969S0 331 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 RHNO1Q9BSD3 238 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms