RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 ZNF587BE7ETH6 402 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 THBS1P07996 1170 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 ITGA5P08648 1049 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 MPGP29372 298 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 TTKP33981 857 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 SLC18A1P54219 525 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 UBE2NP61088 152 aaKnown RBP15.4■□□□□ 0.06
COL7A1-206ENST00000466591 NCALDP61601 193 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 H3F3AP84243 136 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 CHRNB3Q05901 458 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 SPOCK1Q08629 439 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 BNIP2Q12982 314 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 SLC17A1Q14916 467 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 TSPO2Q5TGU0 170 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 RNF220Q5VTB9 566 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 AP1ARQ63HQ0 302 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 SEZ6L2Q6UXD5 910 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 TMEM99Q8N816 258 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 LRRC8CQ8TDW0 803 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 SLC25A36Q96CQ1 311 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 MUS81Q96NY9 551 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 OR52B2Q96RD2 323 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 SDR39U1Q9NRG7 319 aaPredicted RBP15.4■□□□□ 0.06
COL7A1-206ENST00000466591 YAE1D1Q9NRH1 226 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 SELENONQ9NZV5 590 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 B3GALT5Q9Y2C3 310 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 USF3Q68DE3 2245 aa15.4■□□□□ 0.06
COL7A1-206ENST00000466591 LIPT2A6NK58 231 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 ELOA3DA6NLF2 546 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-206ENST00000466591 TFPTP0C1Z6 253 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 ZCCHC18P0CG32 403 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 PLAURQ03405 335 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 ELOA3BQ3SY89 546 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 GTDC1Q4AE62 458 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 C1orf140Q5VVS0 124 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 DTX2Q86UW9 622 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 ELOA3Q8NG57 546 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 OR9I1Q8NGQ6 314 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 BBS10Q8TAM1 723 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 TMEM45BQ96B21 275 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 SPATA9Q9BWV2 254 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 ADAM19Q9H013 955 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 SLC17A5Q9NRA2 495 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 SLC6A13Q9NSD5 602 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 TMEM45AQ9NWC5 275 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 PRDM4Q9UKN5 801 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 USH1CQ9Y6N9 552 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 PMF1-BGLAPU3KQ54 211 aa15.39■□□□□ 0.05
COL7A1-206ENST00000466591 AQP7P3A6NL99 342 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 E7EQL1 145 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 CLIC1O00299 241 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 NR5A2O00482 541 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 NDUFS7O75251 213 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 VAMP5O95183 116 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 DSCR9P59020 149 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 FADDQ13158 208 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 C1DQ13901 141 aaKnown RBP15.38■□□□□ 0.05
COL7A1-206ENST00000466591 HMBOX1Q6NT76 420 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 ZNF544Q6NX49 715 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 NIPAL3Q6P499 406 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 SLC2A7Q6PXP3 512 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 SERPINA11Q86U17 422 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 KRT73Q86Y46 540 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 MAELQ96JY0 434 aaKnown RBP15.38■□□□□ 0.05
COL7A1-206ENST00000466591 GRIP2Q9C0E4 1043 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 TMBIM4Q9HC24 238 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 TCF7L2Q9NQB0 619 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 RASD1Q9Y272 281 aa15.38■□□□□ 0.05
COL7A1-206ENST00000466591 OR6C65A6NJZ3 312 aa15.37■□□□□ 0.05
COL7A1-206ENST00000466591 KLF11O14901 512 aa15.37■□□□□ 0.05
COL7A1-206ENST00000466591 NTF4P34130 210 aa15.37■□□□□ 0.05
COL7A1-206ENST00000466591 FOXG1P55316 489 aaPredicted RBP15.37■□□□□ 0.05
COL7A1-206ENST00000466591 CLIP4Q8N3C7 705 aa15.37■□□□□ 0.05
COL7A1-206ENST00000466591 ZNF385AQ96PM9 386 aaKnown RBP15.37■□□□□ 0.05
COL7A1-206ENST00000466591 SPATA5L1Q9BVQ7 753 aa15.37■□□□□ 0.05
COL7A1-206ENST00000466591 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.37■□□□□ 0.05
COL7A1-206ENST00000466591 HIVEP2P31629 2446 aa15.37■□□□□ 0.05
COL7A1-206ENST00000466591 DSPPQ9NZW4 1301 aa15.37■□□□□ 0.05
COL7A1-206ENST00000466591 FRS3O43559 492 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 TLX2O43763 284 aaPredicted RBP15.36■□□□□ 0.05
COL7A1-206ENST00000466591 CD8AP01732 235 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 PRG2P13727 222 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 ZNF43P17038 809 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 PPIBP23284 216 aaKnown RBP15.36■□□□□ 0.05
COL7A1-206ENST00000466591 ACAA2P42765 397 aaKnown RBP15.36■□□□□ 0.05
COL7A1-206ENST00000466591 RPS5P46782 204 aaKnown RBP15.36■□□□□ 0.05
COL7A1-206ENST00000466591 IRX1P78414 480 aaPredicted RBP15.36■□□□□ 0.05
COL7A1-206ENST00000466591 RGNQ15493 299 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 HIKESHIQ53FT3 197 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 GCNT6Q5T4J0 391 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 C1QTNF12Q5T7M4 302 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 STK35Q8TDR2 534 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 HTRA1Q92743 480 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 MAL2Q969L2 176 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 FBXO17Q96EF6 278 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 ALKBH3Q96Q83 286 aaPredicted RBP15.36■□□□□ 0.05
COL7A1-206ENST00000466591 PIF1Q9H611 641 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 A4GALTQ9NPC4 353 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 CCDC167Q9P0B6 97 aa15.36■□□□□ 0.05
COL7A1-206ENST00000466591 PCDHB14Q9Y5E9 798 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms