RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PNO1Q9NRX1 252 aaKnown RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF346Q9UL40 294 aaKnown RBP8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF337Q9Y3M9 751 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 MTCH2Q9Y6C9 303 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 RP1P56715 2156 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 ASXL3Q9C0F0 2248 aa8.18□□□□□ -1.1
SYNE1-217ENST00000466159 TRBV2A0A0J9YWF9 115 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 IDSB3KWA1 339 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 RGS13O14921 159 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 EEF1E1O43324 174 aaKnown RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 SDC3O75056 442 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 FZD7O75084 574 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 PPM1BO75688 479 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ATF1P18846 271 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 HLA-DMAP28067 261 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 CD38P28907 300 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 AQP2P41181 271 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 OR1D4P47884 311 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 GBX2P52951 348 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 GPR176Q14439 515 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ZSWIM7Q19AV6 140 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 CDONQ4KMG0 1287 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 COL13A1Q5TAT6 717 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 PRAMEF17Q5VTA0 474 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 GKN2Q86XP6 184 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 POMGNT2Q8NAT1 580 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 OR14A16Q8NHC5 309 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ADAMTS18Q8TE60 1221 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 C17orf50Q8WW18 174 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 TRIM63Q969Q1 353 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ORAI1Q96D31 301 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 Q96M85 177 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 HSPA12BQ96MM6 686 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF578Q96N58 590 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 MOGAT1Q96PD6 335 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 OR14A2Q96R54 314 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 GFM1Q96RP9 751 aaKnown RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 MARVELD1Q9BSK0 173 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 PDE7BQ9NP56 450 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 PAQR5Q9NXK6 330 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 NCDNQ9UBB6 729 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 TEX13CA0A0J9YWL9 993 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 A0A1B0GVT2 93 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ELOA3DA6NLF2 546 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ARPC3O15145 178 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 GMFGO60234 142 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 SNRPBP14678 240 aaKnown RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 HPGDP15428 266 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 EDNRAP25101 427 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 RBMS1P29558 406 aaKnown RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 CDKN2AP42771 156 aaKnown RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 SRP9P49458 86 aaKnown RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 SLC37A1P57057 533 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 RPS4XP62701 263 aaKnown RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ACTA2P62736 377 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ACTG2P63267 376 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ELOA3BQ3SY89 546 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 CEP78Q5JTW2 689 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 TTLL10Q6ZVT0 673 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 NOXA1Q86UR1 476 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 SYS1Q8N2H4 156 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 C10orf53Q8N6V4 93 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 TEX19Q8NA77 164 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 ELOA3Q8NG57 546 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 RFT1Q96AA3 541 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 LRFN5Q96NI6 719 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 TSSK2Q96PF2 358 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 NMNAT2Q9BZQ4 307 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 OR8D2Q9GZM6 311 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 NXF5Q9H1B4 397 aaKnown RBP8.17□□□□□ -1.1
SYNE1-217ENST00000466159 SYNDIG1Q9H7V2 258 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 LMAN1LQ9HAT1 526 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 UBQLN4Q9NRR5 601 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 LANCL2Q9NS86 450 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 PRODH2Q9UF12 536 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 GMEB2Q9UKD1 530 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 UNC13CQ8NB66 2214 aa8.17□□□□□ -1.1
SYNE1-217ENST00000466159 A0A1W2PR77 199 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 LILRA5A6NI73 299 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 PRR32B1ATL7 298 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-217ENST00000466159 EPXP11678 715 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 MST1P26927 711 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 NUDT1P36639 197 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 MAGEB1P43366 347 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 CAPZA2P47755 286 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 EGR4Q05215 589 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 LGALS3BPQ08380 585 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 SERTAD2Q14140 314 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 CDK10Q15131 360 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 RNASE12Q5GAN4 147 aaKnown RBP8.16□□□□□ -1.1
SYNE1-217ENST00000466159 FNDC7Q5VTL7 733 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 WBP2NLQ6ICG8 309 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 LEG1Q6P5S2 330 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ESPNLQ6ZVH7 1005 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ATG4DQ86TL0 474 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-217ENST00000466159 PRR22Q8IZ63 422 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 YIPF7Q8N8F6 280 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF511Q8NB15 262 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms