RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 CALHM3Q86XJ0 350 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 RASSF5Q8WWW0 418 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 TAMM41Q96BW9 452 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 TRIM2Q9C040 744 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 KLHL4Q9C0H6 718 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 MYLK2Q9H1R3 596 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 EVA1AQ9H8M9 152 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 BCO1Q9HAY6 547 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 TMEM27Q9HBJ8 222 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 ELOVL5Q9NYP7 299 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 USP22Q9UPT9 525 aa12.95□□□□□ -0.34
USP39-206ENST00000448971 SH3D21A4FU49 640 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 TMEM229AB2RXF0 380 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 EIF1BO60739 113 aaKnown RBP12.94□□□□□ -0.34
USP39-206ENST00000448971 ATE1O95260 518 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 FPR1P21462 350 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 SLC7A2P52569 658 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 CEACAM7Q14002 265 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 DEFB113Q30KQ7 82 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 C1orf140Q5VVS0 124 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 TFAP2EQ6VUC0 442 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 BEND4Q6ZU67 534 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 NUFIP2Q7Z417 695 aaKnown RBP12.94□□□□□ -0.34
USP39-206ENST00000448971 BIVMQ86UB2 503 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 GPR32P1Q8NGA4 272 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 ARHGDIGQ99819 225 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 NAA11Q9BSU3 229 aaPredicted RBP12.94□□□□□ -0.34
USP39-206ENST00000448971 RSPO3Q9BXY4 272 aaPredicted RBP12.94□□□□□ -0.34
USP39-206ENST00000448971 POTEKPQ9BYX7 375 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 PLEKHF2Q9H8W4 249 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 EFCAB1Q9HAE3 211 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 PLSCR4Q9NRQ2 329 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 ADPRHL2Q9NX46 363 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 C6orf203Q9P0P8 240 aaPredicted RBP12.94□□□□□ -0.34
USP39-206ENST00000448971 NDRG3Q9UGV2 375 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 TRAPPC4Q9Y296 219 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 AP3M1Q9Y2T2 418 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 ARL2BPQ9Y2Y0 163 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 ZANQ9Y493 2812 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 RTTNQ86VV8 2226 aa12.94□□□□□ -0.34
USP39-206ENST00000448971 C16orf97H3BN30 126 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 GCM2O75603 506 aaPredicted RBP12.93□□□□□ -0.34
USP39-206ENST00000448971 DCTN3O75935 186 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 IFNA14P01570 189 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 RAF1P04049 648 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 PNMTP11086 282 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 EPXP11678 715 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 CD247P20963 164 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 PRDX6P30041 224 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 UGT2B10P36537 528 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 VEZF1Q14119 521 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 OR1Q1Q15612 314 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 DUSP7Q16829 419 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 OTUD3Q5T2D3 398 aaPredicted RBP12.93□□□□□ -0.34
USP39-206ENST00000448971 ULK3Q6PHR2 472 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 C6orf89Q6UWU4 347 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 CCDC80Q76M96 950 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.93□□□□□ -0.34
USP39-206ENST00000448971 GALNT5Q7Z7M9 940 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 KRTAP1-3Q8IUG1 177 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 MICU2Q8IYU8 434 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 LSMEM1Q8N8F7 131 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 STK35Q8TDR2 534 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 DNAJA4Q8WW22 397 aaPredicted RBP12.93□□□□□ -0.34
USP39-206ENST00000448971 PROX1Q92786 737 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 ZNF775Q96BV0 537 aaPredicted RBP12.93□□□□□ -0.34
USP39-206ENST00000448971 ZNF583Q96ND8 569 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 MCHR1Q99705 422 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 MED18Q9BUE0 208 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 PRR14Q9BWN1 585 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 C12orf10Q9HB07 376 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 CMTM6Q9NX76 183 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 SLC9A8Q9Y2E8 581 aa12.93□□□□□ -0.34
USP39-206ENST00000448971 NOSIPQ9Y314 301 aaKnown RBP12.93□□□□□ -0.34
USP39-206ENST00000448971 A0A0B4J2E0 115 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 A0A1B0GX12 115 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 ELOVL7A1L3X0 281 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 LIPT2A6NK58 231 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 CPSF4LA6NMK7 179 aaKnown RBP12.92□□□□□ -0.34
USP39-206ENST00000448971 ZNF724A8MTY0 619 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 COL6A5A8TX70 2615 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 ZNF814B7Z6K7 855 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 GPR171O14626 319 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 RAMP1O60894 148 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 AKR7A3O95154 331 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 LGI1O95970 557 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 C8BP07358 591 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 PTNP21246 168 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 RPS5P46782 204 aaKnown RBP12.92□□□□□ -0.34
USP39-206ENST00000448971 LIPEQ05469 1076 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 NRF1Q16656 503 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 FAM91A1Q658Y4 838 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 PAQR6Q6TCH4 344 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 C5orf46Q6UWT4 87 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 HACD2Q6Y1H2 254 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 Q71RC1 249 aaPredicted RBP12.92□□□□□ -0.34
USP39-206ENST00000448971 CCDC103Q8IW40 242 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 ZNF100Q8IYN0 542 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 OR6T1Q8NGN1 323 aa12.92□□□□□ -0.34
USP39-206ENST00000448971 SLC38A4Q969I6 547 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms