RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PIF1Q9H611 641 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 CCM2LQ9NUG4 571 aaPredicted RBP13.45□□□□□ -0.26
LIMS3-201ENST00000437679 PARPBPQ9NWS1 579 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 ARMCX1Q9P291 453 aa13.45□□□□□ -0.26
LIMS3-201ENST00000437679 AQP7P3A6NL99 342 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 FXYD1O00168 92 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 LYZL6O75951 148 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 LGI1O95970 557 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 IGHV3-9P01782 118 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 OPN1SWP03999 348 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 RAF1P04049 648 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 C8BP07358 591 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 EDNRAP25101 427 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 RPS5P46782 204 aaKnown RBP13.44□□□□□ -0.26
LIMS3-201ENST00000437679 GZMMP51124 257 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 NR1H2P55055 460 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 KEAP1Q14145 624 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 SLC17A1Q14916 467 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 OR1Q1Q15612 314 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 RABL3Q5HYI8 236 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 FBXW9Q5XUX1 488 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 FAM91A1Q658Y4 838 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 ERICH5Q6P6B1 374 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 CASP12Q6UXS9 341 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 GPAT4Q86UL3 456 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 MFSD8Q8NHS3 518 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 RP9Q8TA86 221 aaKnown RBP13.44□□□□□ -0.26
LIMS3-201ENST00000437679 HSD17B8Q92506 261 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 SLC25A36Q96CQ1 311 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 PRR14Q9BWN1 585 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 NGBQ9NPG2 151 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 FLVCR1Q9Y5Y0 555 aa13.44□□□□□ -0.26
LIMS3-201ENST00000437679 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.43□□□□□ -0.26
LIMS3-201ENST00000437679 A0A1W2PPR1 153 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 KLF4O43474 513 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 OR2T1O43869 369 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 VAMP5O95183 116 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 COX5AP20674 150 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 IGHV1-2P23083 117 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 EGR4Q05215 589 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 TESK1Q15569 626 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 DUSP7Q16829 419 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 CCDC80Q76M96 950 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 SPATA21Q7Z572 469 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 CALHM3Q86XJ0 350 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 POU5F2Q8N7G0 328 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 OR9K2Q8NGE7 335 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 RASSF5Q8WWW0 418 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 SLC38A4Q969I6 547 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 RCN3Q96D15 328 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 KTI12Q96EK9 354 aaPredicted RBP13.43□□□□□ -0.26
LIMS3-201ENST00000437679 MCHR1Q99705 422 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 ARHGDIGQ99819 225 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 ELAC2Q9BQ52 826 aaKnown RBP13.43□□□□□ -0.26
LIMS3-201ENST00000437679 NSRP1Q9H0G5 558 aaKnown RBP13.43□□□□□ -0.26
LIMS3-201ENST00000437679 ASB6Q9NWX5 421 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 RASD1Q9Y272 281 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 F8P00451 2351 aa13.43□□□□□ -0.26
LIMS3-201ENST00000437679 TRAV36DV7A0A075B6V5 113 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 A0A087WUJ7 227 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 A0A0B4J2E0 115 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 A0A1B0GX12 115 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 CIB4A0PJX0 185 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 FTCDNL1E5RQL4 147 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 M0R3H8 397 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 FMO6PO60774 539 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 ATE1O95260 518 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 GGT1P19440 569 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 NTF4P34130 210 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 VEZF1Q14119 521 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 TAB1Q15750 504 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 STK11Q15831 433 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 NRF1Q16656 503 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 FAM69AQ5T7M9 428 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 SSX8Q7RTT4 187 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 AAED1Q7RTV5 226 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 GPR32P1Q8NGA4 272 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 TMEM45BQ96B21 275 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 TAMM41Q96BW9 452 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 MBD6Q96DN6 1003 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 PLPPR2Q96GM1 343 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 HS3ST6Q96QI5 342 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 EPYCQ99645 322 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 FOXC2Q99958 501 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 WFDC6Q9BQY6 131 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 PTDSS2Q9BVG9 487 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 UBTD1Q9HAC8 227 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 UPB1Q9UBR1 384 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 AP3M1Q9Y2T2 418 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 AKAP9Q99996 3911 aa13.42□□□□□ -0.26
LIMS3-201ENST00000437679 CCT8L1PA6NM43 557 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 TPST2O60704 377 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 IFNA14P01570 189 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 COX4I1P13073 169 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 CD247P20963 164 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 LOXP28300 417 aaPredicted RBP13.41□□□□□ -0.26
LIMS3-201ENST00000437679 P2RY4P51582 365 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 SEC24CP53992 1094 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 CDH12P55289 794 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 FAPQ12884 760 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms