RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MMP26Q9NRE1 261 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 IL37Q9NZH6 218 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 H0YIV9 168 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 FABP7O15540 132 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ADAM11O75078 769 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 CDC123O75794 336 aaPredicted RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 SOX14O95416 240 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 OR4E1P0C645 316 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 EIF1P41567 113 aaKnown RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 OR4D2P58180 307 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ZNF154Q13106 437 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ZNF805Q5CZA5 627 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 OR4E2Q8NGC2 313 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 SLC35B4Q969S0 331 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TAF9BQ9HBM6 251 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 POMT2Q9UKY4 750 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 PIKFYVEQ9Y2I7 2098 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ACSM4P0C7M7 580 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ARRB1P49407 418 aaPredicted RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 EPHA4P54764 986 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 MGAT3Q09327 533 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ETFRF1Q6IPR1 90 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ZNF343Q6P1L6 599 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 C22orf39Q6P5X5 142 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ARL6IP6Q8N6S5 226 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 DTWD2Q8NBA8 298 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 IL17RDQ8NFM7 739 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 OR52H1Q8NGJ2 320 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 SCMH1Q96GD3 660 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 BORCS6Q96GS4 357 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 WDFY2Q96P53 400 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 GABARAPL3Q9BY60 117 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 PRDM9Q9NQV7 894 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TOGARAM1Q9Y4F4 1720 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TMEM265A0A087WTH1 108 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 A0A1W2PPH5 198 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 SRMP19623 302 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 CLCNKBP51801 687 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 HTR4Q13639 388 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ADGRA1Q86SQ6 560 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 GRHL3Q8TE85 626 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ATP5SQ99766 215 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 WNT10BO00744 389 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 GLSO94925 669 aaPredicted RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 GSTP1P09211 210 aaKnown RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 GPX3P22352 226 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 GABRR2P28476 465 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ERVS71-1P61550 626 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 EEF1A1P68104 462 aaKnown RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 SIRPAP78324 504 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ADARB1P78563 741 aaKnown RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 ARHGAP40Q5TG30 622 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 EEF1A1P5Q5VTE0 462 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 BPIFB2Q8N4F0 458 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 PQLC3Q8N755 202 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 VAMP8Q9BV40 100 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 POLLQ9UGP5 575 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 MED1Q15648 1581 aaPredicted RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 APOA2P02652 100 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 IVDP26440 423 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 GATMP50440 423 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 HNRNPA3P51991 378 aaKnown RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 P2RX3P56373 397 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 FBXL22Q6P050 247 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 HCAR1Q9BXC0 346 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 CHST6Q9GZX3 395 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 MIR1-1HGQ9H1L0 117 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 UBQLN4Q9NRR5 601 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ACOXLQ9NUZ1 547 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 GPR25O00155 361 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 CT45A10P0DMU9 189 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 CLDN20P56880 219 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 C19orf57Q0VDD7 668 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 SLC10A6Q3KNW5 377 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TMEM64Q6YI46 380 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ZNF765Q7L2R6 523 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ARV1Q9H2C2 271 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TAS2R5Q9NYW4 299 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 DNAJB11Q9UBS4 358 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 DDTLA6NHG4 134 aaPredicted RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 GRXCR1A8MXD5 290 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TPST2O60704 377 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 VAMP5O95183 116 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TPOP07202 933 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 PSMB6P28072 239 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 GRB2P62993 217 aaKnown RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 SLC35A2P78381 396 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 FXNQ16595 210 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 YOD1Q5VVQ6 348 aaPredicted RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 MKXQ8IYA7 352 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 LHFPL5Q8TAF8 219 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 EPHX3Q9H6B9 360 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 FLVCR2Q9UPI3 526 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ST8SIA5O15466 376 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 T-ENOLP0DO92 83 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 ALAS2P22557 587 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 FRMD1Q8N878 549 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 OR4D10Q8NGI6 311 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 DDX1Q92499 740 aaKnown RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 C11orf84Q9BUA3 381 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms