RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TSSK3Q96PN8 268 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 SMIM14Q96QK8 99 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 JAM3Q9BX67 310 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 USP36Q9P275 1121 aaKnown RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 SAMD4AQ9UPU9 718 aaKnown RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 IGHV1OR15-9A0A0B4J2B8 117 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 TRBC2A0A5B9 178 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 PPP1R2P9O14990 202 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 ERI3O43414 337 aaKnown RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 PIP5K1CO60331 668 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 DRD3P35462 400 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 HLXQ14774 488 aaPredicted RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 RIPPLY2Q5TAB7 128 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 HIST2H3PS2Q5TEC6 136 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 PXKQ7Z7A4 578 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 PTRH1Q86Y79 214 aaKnown RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 OR52E1Q8NGJ3 308 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 ESAMQ96AP7 390 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 NOL4LQ96MY1 436 aaPredicted RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 THAP7Q9BT49 309 aaPredicted RBP9.09□□□□□ -0.95
USP54-205ENST00000424265 NEUROD4Q9HD90 331 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 SRPK3Q9UPE1 567 aa9.09□□□□□ -0.95
USP54-205ENST00000424265 CASC3O15234 703 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 ATXN8OSP0DMR3 200 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 RHEBQ15382 184 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 COQ5Q5HYK3 327 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 TRIM46Q7Z4K8 759 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 RNF113BQ8IZP6 322 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 OR5AR1Q8NGP9 310 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 TAAR8Q969N4 342 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 ZFYVE21Q9BQ24 234 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 MBNL1Q9NR56 388 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 PSORS1C1Q9UIG5 152 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 A0A1W2PRB8 838 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 CLEC3AO75596 197 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 TCRBP04435 133 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 DRD2P14416 443 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 CSNK2A2P19784 350 aaPredicted RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 FPR1P21462 350 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 AHRP35869 848 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 E2F1Q01094 437 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 ZNF763Q0D2J5 394 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 MTAPQ13126 283 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 HYAL4Q2M3T9 481 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 IDNKQ5T6J7 187 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 PHF19Q5T6S3 580 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 B3GNTL1Q67FW5 361 aaPredicted RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 OR2T5Q6IEZ7 315 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 OR2T29Q8NH02 315 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 INSM2Q96T92 566 aaPredicted RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 MTERF1Q99551 399 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 ADAT1Q9BUB4 502 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 POLDIP3Q9BY77 421 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 MFFQ9GZY8 342 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 MED17Q9NVC6 651 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 VNN3Q9NY84 501 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 PCDHA9Q9Y5H5 950 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 PLXNA3P51805 1871 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 SPTY2D1-AS1A0A0U1RR47 76 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 A8MXE2 369 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 ZNF670-ZNF695F2Z2N8 137 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 MPZL2O60487 215 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 PRAF2O60831 178 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 BMP7P18075 431 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 FGF7P21781 194 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 GLP1RP43220 463 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 CCR4P51679 360 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 PPP2CBP62714 309 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 PPP2CAP67775 309 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 NPRL3Q12980 569 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 SFRP5Q5T4F7 317 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 EIF5AL1Q6IS14 154 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 CASP12Q6UXS9 341 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 TMEM92Q6UXU6 159 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 DCXRQ7Z4W1 244 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 CLDN22Q8N7P3 220 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 THAP3Q8WTV1 239 aaPredicted RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 OR1E3Q8WZA6 343 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 GTPBP3Q969Y2 492 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 SEBOXQ9HB31 216 aaPredicted RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 MYOZ1Q9NP98 299 aaPredicted RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 RPS6KB2Q9UBS0 482 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 TARM1B6A8C7 271 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 ZNF821O75541 412 aaPredicted RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 ERAL1O75616 437 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 PMP2P02689 132 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 GGT1P19440 569 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 COL9A1P20849 921 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 GIFP27352 417 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 MSX1P28360 303 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 GDF5P43026 501 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 CEBPGP53567 150 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 SEC61A1P61619 476 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 TRA2BP62995 288 aaKnown RBP9.08□□□□□ -0.96
USP54-205ENST00000424265 PITPNAQ00169 270 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 TRIM61Q5EBN2 209 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 ABI3BPQ7Z7G0 1075 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 OR10A6Q8NH74 314 aa9.08□□□□□ -0.96
USP54-205ENST00000424265 LOXL4Q96JB6 756 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms