RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PIGMQ9H3S5 423 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 KLHL31Q9H511 634 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 SPG21Q9NZD8 308 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 CES1P1Q9UKY3 287 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 PCYT1BQ9Y5K3 369 aaPredicted RBP9.84□□□□□ -0.83
USP54-204ENST00000422491 V9GY05 133 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 TRAV27A0A087WT01 109 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 ABHD14A-ACY1A0A1B0GW23 586 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 CLEC3AO75596 197 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 PPP1R3DO95685 299 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 AIFM1O95831 613 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 OR2T7P0C7T2 308 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 TMIGD3P0DMS9 266 aaPredicted RBP9.84□□□□□ -0.83
USP54-204ENST00000422491 CALCBP10092 127 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 RORAP35398 523 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 MAGEB1P43366 347 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 EEF1A1P68104 462 aaKnown RBP9.84□□□□□ -0.83
USP54-204ENST00000422491 DCDP81605 110 aaKnown RBP9.84□□□□□ -0.83
USP54-204ENST00000422491 SLC9A5Q14940 896 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 GUCA2BQ16661 112 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 CCDC157Q569K6 752 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 JMJD6Q6NYC1 403 aaPredicted RBP9.84□□□□□ -0.83
USP54-204ENST00000422491 C17orf99Q6UX52 265 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 IFNL1Q8IU54 200 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 CBLN2Q8IUK8 224 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 NPAS4Q8IUM7 802 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 SVBPQ8N300 66 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 OR2T27Q8NH04 317 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 BPIFA2Q96DR5 249 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 ZMYND19Q96E35 227 aaPredicted RBP9.84□□□□□ -0.83
USP54-204ENST00000422491 ACTRT3Q9BYD9 372 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 FAM117AQ9C073 453 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 PITHD1Q9GZP4 211 aaPredicted RBP9.84□□□□□ -0.83
USP54-204ENST00000422491 STARD7Q9NQZ5 370 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 C2orf42Q9NWW7 574 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 ICAM5Q9UMF0 924 aa9.84□□□□□ -0.83
USP54-204ENST00000422491 A0A0D9SG52 128 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 TMEM218A2RU14 115 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 H7C417 338 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 GPRIN2O60269 458 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 GLSO94925 669 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 CSNK2A2P19784 350 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 PVALBP20472 110 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 FAUP35544 74 aaKnown RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 PSMB10P40306 273 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 STARP49675 285 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 CSNK1G2P78368 415 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 SLC7A9P82251 487 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 ARHGAP19Q14CB8 494 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 PCGF3Q3KNV8 242 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 LY6G6FQ5SQ64 297 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 DHRS7BQ6IAN0 325 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 MRM1Q6IN84 353 aaKnown RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 GAREM2Q75VX8 874 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 ZNF546Q86UE3 836 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 ADIPOR2Q86V24 386 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 GLB1L2Q8IW92 636 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 CRIPAKQ8N1N5 446 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 SLC16A11Q8NCK7 471 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 TMIEQ8NEW7 156 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 DMBX1Q8NFW5 382 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 RPS4Y2Q8TD47 263 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 C15orf40Q8WUR7 153 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 MS4A4EQ96PG1 132 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 MRI1Q9BV20 369 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 MTHFD2LQ9H903 347 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 MTFP1Q9UDX5 166 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 GNG8Q9UK08 70 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 LINC00587B1AMM8 73 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 NRG2O14511 850 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 STATHP02808 62 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 F3P13726 295 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 LAG3P18627 525 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 PPIAP62937 165 aaKnown RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 UBE2IP63279 158 aaKnown RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 STX4Q12846 297 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 NUMA1Q14980 2115 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 TAF1CQ15572 869 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 MANEAQ5SRI9 462 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 TMEM215Q68D42 235 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 SLC48A1Q6P1K1 146 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 C11orf88Q6PI97 169 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 OR2W3Q7Z3T1 314 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 RANBP3LQ86VV4 465 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 TMEM25Q86YD3 366 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 KCNRGQ8N5I3 272 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 OR51A7Q8NH64 312 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 RGP1Q92546 391 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 TFGQ92734 400 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 ADAT1Q9BUB4 502 aaKnown RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 RSPH9Q9H1X1 276 aaPredicted RBP9.83□□□□□ -0.84
USP54-204ENST00000422491 FKRPQ9H9S5 495 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 TMEM138Q9NPI0 162 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 INSL5Q9Y5Q6 135 aa9.83□□□□□ -0.84
USP54-204ENST00000422491 COL4A6Q14031 1691 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 TBC1D3EA0A087X179 549 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 IGKV1-8A0A0C4DH67 115 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 HIST1H1TP22492 207 aaPredicted RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 GABRR2P28476 465 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 LUMP51884 338 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 270.2 ms