RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SLC35F2Q8IXU6 374 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 RFT1Q96AA3 541 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 KLF4O43474 513 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 CHP2O43745 196 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 CT45A8P0DMV1 189 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 CT45A9P0DMV2 189 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 TFPIP10646 304 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 ATF1P18846 271 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 AGFG1P52594 562 aaKnown RBP12.27□□□□□ -0.45
VPS54-203ENST00000409558 Q5BKY6 102 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 CT45A2Q5DJT8 189 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 GARNL3Q5VVW2 1013 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 KIAA0895LQ68EN5 471 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 DPY19L4Q7Z388 723 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 PELI1Q96FA3 418 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 ZNF649Q9BS31 505 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 TMEM185BQ9H7F4 350 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 COQ9O75208 318 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 CD1CP29017 333 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 BIKQ13323 160 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 HLA-DQA1Q5Y7H0 255 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 GPR119Q8TDV5 335 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 CDCA3Q99618 268 aaPredicted RBP12.26□□□□□ -0.45
VPS54-203ENST00000409558 RTN4RQ9BZR6 473 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 SYT4Q9H2B2 425 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 SEMA6CQ9H3T2 930 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 WNT1P04628 370 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 THBS1P07996 1170 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 SSTR2P30874 369 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 GBX2P52951 348 aaPredicted RBP12.26□□□□□ -0.45
VPS54-203ENST00000409558 CEP78Q5JTW2 689 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 ASCC1Q8N9N2 400 aaKnown RBP12.26□□□□□ -0.45
VPS54-203ENST00000409558 OR52N1Q8NH53 320 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 LGALS14Q8TCE9 139 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 GPBAR1Q8TDU6 330 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 CNN2Q99439 309 aaKnown RBP12.26□□□□□ -0.45
VPS54-203ENST00000409558 TIMP4Q99727 224 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 OR11A1Q9GZK7 315 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 LYRM4Q9HD34 91 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.26□□□□□ -0.45
VPS54-203ENST00000409558 MKL2Q9ULH7 1088 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 SHISA8B8ZZ34 492 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 EIF1AYO14602 144 aaKnown RBP12.26□□□□□ -0.45
VPS54-203ENST00000409558 GAS6Q14393 721 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 TOMM5Q8N4H5 51 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 LSM14AQ8ND56 463 aaKnown RBP12.26□□□□□ -0.45
VPS54-203ENST00000409558 KTI12Q96EK9 354 aaPredicted RBP12.26□□□□□ -0.45
VPS54-203ENST00000409558 CTRCQ99895 268 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 ADAM30Q9UKF2 790 aa12.26□□□□□ -0.45
VPS54-203ENST00000409558 SERINC4A6NH21 518 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 SCDO00767 359 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 CEBPEQ15744 281 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 ULK3Q6PHR2 472 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 TMEM184AQ6ZMB5 413 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 ZNF485Q8NCK3 441 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 BRIX1Q8TDN6 353 aaKnown RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 SCARF2Q96GP6 870 aaPredicted RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 FBXL21Q9UKT6 434 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 CPED1A4D0V7 1026 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 FLRT2O43155 660 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 SSNA1O43805 119 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 APEHP13798 732 aaKnown RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 F8A1P23610 371 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 CDKN2AP42771 156 aaKnown RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 UBE2IP63279 158 aaKnown RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 FCN2Q15485 313 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 MEP1BQ16820 701 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 PRAMEF8Q5VWM4 474 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 PRAMEF7Q5VXH5 474 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 FCRLAQ7L513 359 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 OR10AC1Q8NH08 325 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 ZNF764Q96H86 408 aaPredicted RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 SARGQ9BW04 601 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 PPP1R3EQ9H7J1 279 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 RBFOX1Q9NWB1 397 aaKnown RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 POMT2Q9UKY4 750 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 KIR2DS5A0A0G2JLQ3 304 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 A0A0G2JNG1 304 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 KIR2DS3K7RE56 304 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 ARSBP15848 533 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 TACR3P29371 465 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 MRPS21P82921 87 aaKnown RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 OC90Q02509 493 aaPredicted RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 KIR2DS5Q14953 304 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 YOD1Q5VVQ6 348 aaPredicted RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 LANCL3Q6ZV70 420 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 NOXA1Q86UR1 476 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 PDE7BQ9NP56 450 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 VDAC3Q9Y277 283 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 ENTPD2Q9Y5L3 495 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 CHURC1-FNTBB4DL54 471 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 NKX2-2O95096 273 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 IGHA1P01876 353 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 ATP12AP54707 1039 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 MELKQ14680 651 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 NKD1Q969G9 470 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 MICU1Q9BPX6 476 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 WDR76Q9H967 626 aa12.25□□□□□ -0.45
VPS54-203ENST00000409558 EXOGQ9Y2C4 368 aaKnown RBP12.25□□□□□ -0.45
VPS54-203ENST00000409558 TNFRSF10CO14798 259 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms