RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 NRROSQ86YC3 692 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 TMC8Q8IU68 726 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 OR8D4Q8NGM9 314 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 BPIFA2Q96DR5 249 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 POM121Q96HA1 1249 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 TNFRSF13CQ96RJ3 184 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 IGLV3-16A0A075B6K0 115 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 EIF4EP06730 217 aaKnown RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 CPEP16870 476 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 PPT1P50897 306 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 CASP6P55212 293 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SLC25A35Q3KQZ1 300 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 PRRT3Q5FWE3 981 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 ALG10BQ5I7T1 473 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 FAM74A1Q5RGS3 127 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 C3orf33Q6P1S2 294 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SFXN4Q6P4A7 337 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 THAP4Q8WY91 577 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 CNRIP1Q96F85 164 aaPredicted RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 RRNAD1Q96FB5 475 aaKnown RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SPACA7Q96KW9 195 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 HS6ST2Q96MM7 605 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF578Q96N58 590 aaPredicted RBP11.07□□□□□ -0.64
HMGB1-206ENST00000405805 SEMA4CQ9C0C4 833 aa11.07□□□□□ -0.64
HMGB1-206ENST00000405805 CDHR4A6H8M9 788 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 A8MVJ9 347 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 VEGFDO43915 354 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 BSGP35613 385 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 BCL6P41182 706 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 RAB13P51153 203 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 PITPNAQ00169 270 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ERV3-1Q14264 604 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 MRPL2Q5T653 305 aaKnown RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 TMEM65Q6PI78 240 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 GDF7Q7Z4P5 450 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 BEST3Q8N1M1 668 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 FBLIM1Q8WUP2 373 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 MRPL48Q96GC5 212 aaKnown RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 OR14A2Q96R54 314 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 SLC38A3Q99624 504 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ACTRT3Q9BYD9 372 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 A4GALTQ9NPC4 353 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 B3GAT2Q9NPZ5 323 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 MBNL1Q9NR56 388 aaKnown RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 PEX12O00623 359 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 TCAPO15273 167 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 TCRBP04435 133 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 VEGFCP49767 419 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 RNF4P78317 190 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 SMAD4Q13485 552 aaKnown RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 GAS6Q14393 721 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 TMEM44Q2T9K0 475 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 TRMT12Q53H54 448 aaKnown RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF322Q6U7Q0 402 aaPredicted RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 FCRLAQ7L513 359 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 GID4Q8IVV7 300 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 VPS25Q9BRG1 176 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 SIDT1Q9NXL6 827 aaKnown RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 GREB1Q4ZG55 1949 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 OR2W5A6NFC9 320 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 FGF19O95750 216 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 LGI1O95970 557 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 TRHRP34981 398 aaPredicted RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 HNRNPA1L2Q32P51 320 aaKnown RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 EIPR1Q53HC9 387 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 C1orf94Q6P1W5 598 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 FAM122BQ7Z309 247 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 PLPP6Q8IY26 295 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 LAS2Q8IYD9 372 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 OR6N2Q8NGY6 317 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 TBC1D20Q96BZ9 403 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 FBXO17Q96EF6 278 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 LMF1Q96S06 567 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 TMEM43Q9BTV4 400 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 C20orf24Q9BUV8 137 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 IL23AQ9NPF7 189 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 LIPT1Q9Y234 373 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 CARNS1A5YM72 827 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF705FA8MVS1 300 aaPredicted RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 STK25O00506 426 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 NRG2O14511 850 aaPredicted RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 GOSR2O14653 212 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 PHOX2AO14813 284 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 FADS1O60427 444 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 NDUFS6O75380 124 aaKnown RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF705DP0CH99 300 aaPredicted RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF705BP0CI00 300 aaPredicted RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 NFYAP23511 347 aaPredicted RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ATP5A1P25705 553 aaKnown RBP11.06□□□□□ -0.64
HMGB1-206ENST00000405805 GSG1LQ6UXU4 331 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF547Q8IVP9 402 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 SIRT6Q8N6T7 355 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ABHD4Q8TB40 342 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 ORAI3Q9BRQ5 295 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 SGPP1Q9BX95 441 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 SCP2D1Q9UJQ7 156 aa11.06□□□□□ -0.64
HMGB1-206ENST00000405805 TRPM6Q9BX84 2022 aa11.05□□□□□ -0.64
HMGB1-206ENST00000405805 TRAPPC13A5PLN9 417 aa11.05□□□□□ -0.64
HMGB1-206ENST00000405805 SLC22A31A6NKX4 558 aa11.05□□□□□ -0.64
HMGB1-206ENST00000405805 GDI1P31150 447 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms