RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 KBTBD3Q8NAB2 608 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 CNIH3Q8TBE1 160 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 TCP10LQ8TDR4 215 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 CA5BP1Q8WTZ4 195 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 TXNDC15Q96J42 360 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 XPO6Q96QU8 1125 aaKnown RBP3.54□□□□□ -1.84
HMGB1-204ENST00000399489 KCNA7Q96RP8 456 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 CPXM1Q96SM3 734 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 CNN2Q99439 309 aaKnown RBP3.54□□□□□ -1.84
HMGB1-204ENST00000399489 DCAF13Q9NV06 445 aaKnown RBP3.54□□□□□ -1.84
HMGB1-204ENST00000399489 NUP50Q9UKX7 468 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 PROCRQ9UNN8 238 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 IQSEC2Q5JU85 1478 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 NEO1Q92859 1461 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 A0A0A6YYH2 397 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 CCDC182A6NF36 153 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 A6NJ64 397 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 H0YJX3 145 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 MKRN2OSH3BPM6 223 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 SMLR1H3BR10 107 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 PGRMC1O00264 195 aaKnown RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 TM9SF1O15321 606 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 PSTPIP1O43586 416 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 GATCO43716 136 aaKnown RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 CIAO1O76071 339 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 RAB3DO95716 219 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 FADS2O95864 444 aaKnown RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 MMP1P03956 469 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 IFNW1P05000 195 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 ALDOBP05062 364 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 FAM157CP0CG43 387 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 H2AFXP16104 143 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 S100A1P23297 94 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 GCAP28676 217 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 ID1P41134 155 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 CDKN2CP42773 168 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 CEBPGP53567 150 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 PKNOX1P55347 436 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 MYL7Q01449 175 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 RGS1Q08116 209 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 GPR18Q14330 331 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 SPCS2Q15005 226 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 UBE2V2Q15819 145 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 PTPN20Q4JDL3 420 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 DCAF10Q5QP82 559 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 BTNL3Q6UXE8 466 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 FAM151BQ6UXP7 276 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF730Q6ZMV8 503 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 LRRC74BQ6ZQY2 392 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF546Q86UE3 836 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 PLD3Q8IV08 490 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 C10orf67Q8IYJ2 551 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 DCP1BQ8IZD4 617 aaKnown RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 SLC37A3Q8NCC5 494 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF248Q8NDW4 579 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 PLPPR1Q8TBJ4 325 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 GPR151Q8TDV0 419 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 SMAP2Q8WU79 429 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 ART4Q93070 314 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 OTUB2Q96DC9 234 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 SDSLQ96GA7 329 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 ECSITQ9BQ95 431 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 NEURL2Q9BR09 285 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 C7orf50Q9BRJ6 194 aaKnown RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 PPA2Q9H2U2 334 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 OR51M1Q9H341 326 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 C1orf198Q9H425 327 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 ASB8Q9H765 288 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 TRIM45Q9H8W5 580 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 APOBEC3GQ9HC16 384 aaKnown RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 WARS2Q9UGM6 360 aaKnown RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 MAN1B1Q9UKM7 699 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 PLLPQ9Y342 182 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 EXOSC1Q9Y3B2 195 aaKnown RBP3.53□□□□□ -1.84
HMGB1-204ENST00000399489 LRRC42Q9Y546 428 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 URGCP-MRPS24S4R325 110 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 PTPRTO14522 1441 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 ELP1O95163 1332 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 KIAA0556O60303 1618 aa3.53□□□□□ -1.84
HMGB1-204ENST00000399489 A0A087WZ39 114 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 A0A0J9YVX5 310 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 PRAMEF26H0Y7S4 382 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 KLRC4-KLRK1H3BQV0 150 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SIRPB1O00241 398 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 RGS16O15492 202 aaPredicted RBP3.53□□□□□ -1.85
HMGB1-204ENST00000399489 EMC8O43402 210 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 XRCC2O43543 280 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SNAI2O43623 268 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 ATP5LO75964 103 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 AP2A2O94973 939 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 IGSF6O95976 241 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 HLA-HP01893 362 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 IDSP22304 550 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 AQP2P41181 271 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 RFX5P48382 616 aaPredicted RBP3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SERPINB9P50453 376 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 CDC20Q12834 499 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 TRAF3Q13114 568 aa3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SRSF9Q13242 221 aaKnown RBP eCLIP3.53□□□□□ -1.85
HMGB1-204ENST00000399489 SERTAD2Q14140 314 aa3.53□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms