RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CPQQ9Y646 472 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 KIAA0556O60303 1618 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FER1L5A0AVI2 2057 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 NOTOA8MTQ0 251 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 YKT6O15498 198 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 S1PR4O95977 384 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DNAL4O96015 105 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 HLA-HP01893 362 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 BGLAPP02818 100 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FGF1P05230 155 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 HOXB5P09067 269 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SBK2P0C263 348 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR4Q2P0C623 313 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PPP3CBP16298 524 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CPEP16870 476 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 HTR5AP47898 357 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CSNK1A1P48729 337 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CRYBB1P53674 252 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DUSP8Q13202 625 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PAFAH1B3Q15102 231 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM183BQ1AE95 376 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 MOGAT2Q3SYC2 334 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FAM182AQ5T1J6 154 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CST9Q5W186 159 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CLEC6AQ6EIG7 209 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ACOT7LQ6ZUV0 252 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TSEN54Q7Z6J9 526 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR1J2Q8NGS2 313 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ST8SIA4Q92187 359 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FAM3CQ92520 227 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PYCR2Q96C36 320 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FAM210AQ96ND0 272 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CPPED1Q9BRF8 314 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PSMG3Q9BT73 122 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 MRIQ9BWK5 157 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 WDR62O43379 1518 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ATP7AQ04656 1500 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FAM171A2A8MVW0 826 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 INMT-MINDY4F8WBC2 141 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 H1F0P07305 194 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 HOXB8P17481 243 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 GABARAPL2P60520 117 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 HBG1P69891 147 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 HBG2P69892 147 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 KLF1Q13351 362 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 KEAP1Q14145 624 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ATP6V1FQ16864 119 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DHRS4L2Q6PKH6 230 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM207Q6UWW9 146 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DEFB132Q7Z7B7 95 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ZDHHC14Q8IZN3 488 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR51A7Q8NH64 312 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR4S2Q8NH73 311 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TWIST2Q8WVJ9 160 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FAM84BQ96KN1 310 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TCF12Q99081 682 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 GPR61Q9BZJ8 451 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 MTFR1LQ9H019 292 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SPHK2Q9NRA0 654 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PTTG2Q9NZH5 202 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 RABAC1Q9UI14 185 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PBRM1Q86U86 1689 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TRBV23-1A0A0A0MS06 115 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 A0A1W2PQU0 124 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR6C68A6NDL8 312 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TISP43B9A030 160 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FAM157AC9JC47 383 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ACOT8O14734 319 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PCDH17O14917 1159 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR7C1O76099 320 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OPN1MWP04001 364 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 HPNP05981 417 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 UBBP0CG47 229 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 STAG3L2P0CL84 134 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OPN1MW2P0DN77 364 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OPN1MW3P0DN78 364 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CTSAP10619 480 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SDHAP31040 664 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ELLP55199 621 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 RPL30P62888 115 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CDK5Q00535 292 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PIGFQ07326 219 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TSTQ16762 297 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF181Q2M3W8 571 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 LEG1Q6P5S2 330 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 BTNL8Q6UX41 500 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SLC35D2Q76EJ3 337 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 H2BFWTQ7Z2G1 175 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 KCTD20Q7Z5Y7 419 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 LYSMD2Q8IV50 215 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DTWD2Q8NBA8 298 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR4K14Q8NGD5 310 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 RGP1Q92546 391 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 MISP3Q96FF7 219 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 BORCS6Q96GS4 357 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CRAMP1Q96RY5 1269 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 GPR21Q99679 349 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ELOVL1Q9BW60 279 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 NXF2Q9GZY0 626 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 C1orf198Q9H425 327 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms