RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 UTS2BQ765I0 119 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 DTX3Q8N9I9 347 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 ZNF527Q8NB42 609 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 SNX33Q8WV41 574 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 CCNL2Q96S94 520 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 GPX7Q96SL4 187 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 PHF7Q9BWX1 381 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 TP63Q9H3D4 680 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 COPS3Q9UNS2 423 aa19.03■□□□□ 0.64
CCDC88B-203ENST00000359902 SELENOFO60613 162 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 SERPINA3P01011 423 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 C14orf28Q4W4Y0 310 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 SLC35D3Q5M8T2 416 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 PRR23CQ6ZRP0 262 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 SLITRK4Q8IW52 837 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 TMEM151BQ8IW70 566 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 ZNF524Q96C55 264 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 SLC46A1Q96NT5 459 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 DDX28Q9NUL7 540 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 NCDNQ9UBB6 729 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 NLKQ9UBE8 527 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 TRAV1-2A0A0B4J238 106 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 FAM240BA0A1B0GVZ2 78 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 A0A1W2PPK0 400 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 UTS2O95399 124 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 ZNF24P17028 368 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 RAB3BP20337 219 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 ALAS2P22557 587 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 TALDO1P37837 337 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 INPP1P49441 399 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 ZFP69Q49AA0 526 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 TRMT10AQ8TBZ6 339 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 TSLPQ969D9 159 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 DMRTB1Q96MA1 342 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 WACQ9BTA9 647 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 OR8D2Q9GZM6 311 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 UCKL1Q9NWZ5 548 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 GNG8Q9UK08 70 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 MMACHCQ9Y4U1 282 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 NPFFR2Q9Y5X5 522 aa19.02■□□□□ 0.64
CCDC88B-203ENST00000359902 A0A1B0GVC2 190 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 A6NIN4 97 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 RHPN2P1A8MT19 583 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 BLOC1S5-TXNDC5H3BN57 136 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 SCDO00767 359 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 OR2B3O76000 313 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 IGF2P01344 180 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 GSTT2P0CG29 244 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 GSTT2BP0CG30 244 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 MST1P26927 711 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 HLA-DMAP28067 261 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 AQP2P41181 271 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 GRK6P43250 576 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 CCR4P51679 360 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 HNRNPKP61978 463 aaKnown RBP eCLIP19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 RPS11P62280 158 aaKnown RBP eCLIP19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 SMAD4Q13485 552 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 ZNF74Q16587 644 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 RPL22L1Q6P5R6 122 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 PAMR1Q6UXH9 720 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 CADM4Q8NFZ8 388 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 UBASH3BQ8TF42 649 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 LIPHQ8WWY8 451 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 OIT3Q8WWZ8 545 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 HSPA12BQ96MM6 686 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 MOGAT1Q96PD6 335 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 OR2B2Q9GZK3 357 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 EXOSC3Q9NQT5 275 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 TMEM150CB9EJG8 249 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 LANCL1O43813 399 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 TFPIP10646 304 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 RBMS1P29558 406 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 RORAP35398 523 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 CDKN2AP42771 156 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 TATDN3Q17R31 274 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 ZNF57Q68EA5 555 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 LYPD4Q6UWN0 246 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 OR6K6Q8NGW6 343 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 Q96M85 177 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 SNX18Q96RF0 628 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 ACOXLQ9NUZ1 547 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 HIF3AQ9Y2N7 669 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 RNF215Q9Y6U7 377 aa19.01■□□□□ 0.63
CCDC88B-203ENST00000359902 IGKV3D-11A0A0A0MRZ8 115 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 TEX13CA0A0J9YWL9 993 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 C4orf47A7E2U8 309 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 ZNF264O43296 627 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 IGKV3-11P04433 115 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 PITPNBP48739 271 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 EGR4Q05215 589 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 IL10RAQ13651 578 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 C10orf53Q8N6V4 93 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 LRRC75AQ8NAA5 344 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 KLHDC3Q9BQ90 382 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 THAP7Q9BT49 309 aaPredicted RBP19■□□□□ 0.63
CCDC88B-203ENST00000359902 HDHD2Q9H0R4 259 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 TRBV2A0A0J9YWF9 115 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 CENPXA8MT69 81 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 CD1AP06126 327 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms