RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 BOKQ9UMX3 212 aaPredicted RBP6.82□□□□□ -1.32
VPS13A-202ENST00000357409 TRAPPC13A5PLN9 417 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 NECAP1Q8NC96 275 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 ZFPM2Q8WW38 1151 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 PREBQ9HCU5 417 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 WDR37Q9Y2I8 494 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 PABPC4LP0CB38 370 aaKnown RBP6.82□□□□□ -1.32
VPS13A-202ENST00000357409 ATP6AP1Q15904 470 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 PIGGQ5H8A4 983 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 FAM43BQ6ZT52 329 aaPredicted RBP6.82□□□□□ -1.32
VPS13A-202ENST00000357409 SULF2Q8IWU5 870 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 UCN3Q969E3 161 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 TCTN2Q96GX1 697 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 LGALS13Q9UHV8 139 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 PPT2Q9UMR5 302 aa6.82□□□□□ -1.32
VPS13A-202ENST00000357409 IFNA10P01566 189 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 GSTT2P0CG29 244 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SERTAD2Q14140 314 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 BCL7CQ8WUZ0 217 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 C1orf198Q9H425 327 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 GSTO2Q9H4Y5 243 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 RPS10P5Q9NQ39 176 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 IQGAP3Q86VI3 1631 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 M0QYG6 137 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 BLVRBP30043 206 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 ZNF439Q8NDP4 499 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 TFAP2CQ92754 450 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 CMBLQ96DG6 245 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 FIZ1Q96SL8 496 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 ZNF705GA8MUZ8 300 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 HRO43593 1189 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 TP53P04637 393 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 HBQ1P09105 142 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 OR10J4P0C629 311 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 AGTR1P30556 359 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 ALDH3B1P43353 468 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 TLE1Q04724 770 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 LACTB2Q53H82 288 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 ERMP1Q7Z2K6 904 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SLC43A2Q8N370 569 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 RNF170Q96K19 258 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 INTS14Q96SY0 518 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SLC2A11Q9BYW1 496 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 ERVMER34-1Q9H9K5 563 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 GNG12Q9UBI6 72 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 A0A1W2PPH5 198 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 K7EPK0 472 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 PRKACAP17612 351 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 ELAVL4P26378 380 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 C19orf57Q0VDD7 668 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 TRNP1Q6NT89 227 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SYT13Q7L8C5 426 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 CISD2Q8N5K1 135 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 FAM71E2Q8N5Q1 922 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 FAM71CQ8NEG0 241 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SYT3Q9BQG1 590 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 REPIN1Q9BWE0 567 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 HINT3Q9NQE9 182 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 C10orf71Q711Q0 1435 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SPAARA0A1B0GVQ0 90 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 GJE1A6NN92 205 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 CELA2BP08218 269 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 DUSP1P28562 367 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 MRPS34P82930 218 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 CHPT1Q8WUD6 406 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 CNN2Q99439 309 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 TSNAXQ99598 290 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 PRDM6Q9NQX0 595 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 PCDHB16Q9NRJ7 776 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 CDK2P24941 298 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 PRDX6P30041 224 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 C21orf33P30042 268 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 GID4Q8IVV7 300 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 NKAIN4Q8IVV8 208 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 EMG1Q92979 244 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SLCO4A1Q96BD0 722 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 TRMT2BQ96GJ1 504 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 MED29Q9NX70 200 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 CSO75390 466 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 UBE2MP61081 183 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 PPP2CBP62714 309 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 PPP2CAP67775 309 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SF3B4Q15427 424 aaKnown RBP eCLIP6.81□□□□□ -1.321e-6■■■□□ 17.8
VPS13A-202ENST00000357409 BORAQ6PGQ7 559 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 TSLPQ969D9 159 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 NT5C3BQ969T7 300 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 OR2B2Q9GZK3 357 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 UBQLN4Q9NRR5 601 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 MAP2P11137 1827 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 TRBV4-1A0A0J9YWV2 114 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SLC22A31A6NKX4 558 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 PDGFAP04085 211 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 C8BP07358 591 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 ST6GAL1P15907 406 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SRP9P49458 86 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 KCNJ10P78508 379 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 MRPS21P82921 87 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 MRPL10Q7Z7H8 261 aaKnown RBP6.81□□□□□ -1.32
VPS13A-202ENST00000357409 SERPINA11Q86U17 422 aa6.81□□□□□ -1.32
VPS13A-202ENST00000357409 B3GNT7Q8NFL0 401 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms