RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 ST3GAL3Q11203 375 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 TOP3AQ13472 1001 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 PCOLCEQ15113 449 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 OTUD3Q5T2D3 398 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 C6orf52Q5T4I8 152 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 ZNF770Q6IQ21 691 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 ZNF613Q6PF04 617 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 OVCH1Q7RTY7 1134 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 OR4N5Q8IXE1 308 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 C8orf59Q8N0T1 100 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 TAGAPQ8N103 731 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 ATG16L2Q8NAA4 619 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 SMYD1Q8NB12 490 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 ZNF527Q8NB42 609 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 OR10G2Q8NGC3 310 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 C16orf52Q8NHV5 167 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 NUBPLQ8TB37 319 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 BRIX1Q8TDN6 353 aaKnown RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 GPR151Q8TDV0 419 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 CA5BP1Q8WTZ4 195 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 PTPMT1Q8WUK0 201 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 PSMF1Q92530 271 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 SLC9A6Q92581 669 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 HAS2Q92819 552 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 CDS1Q92903 461 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 HSPBAP1Q96EW2 488 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 OTUB1Q96FW1 271 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 RMND5BQ96G75 393 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 C16orf58Q96GQ5 468 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 SENP5Q96HI0 755 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 GPR137Q96N19 417 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 DMRTA2Q96SC8 542 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 ZNF559Q9BR84 538 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 AMBRA1Q9C0C7 1298 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 VN1R1Q9GZP7 353 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 FAM192AQ9GZU8 254 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 OR10A5Q9H207 317 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 TOR3AQ9H497 397 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 NMNAT1Q9HAN9 279 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 ZNF160Q9HCG1 818 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 EQTNQ9NQ60 294 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 PAPOLBQ9NRJ5 636 aaKnown RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 KRT84Q9NSB2 600 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 NDUFA13Q9P0J0 144 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 PDP1Q9P0J1 537 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 CTSFQ9UBX1 484 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 NDRG4Q9ULP0 352 aaKnown RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 SLC35A3Q9Y2D2 325 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 CLCA3PQ9Y6N3 262 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 FLNAP21333 2647 aaKnown RBP6.31□□□□□ -1.4
VPS13A-201ENST00000355766 CCDC88CQ9P219 2028 aa6.31□□□□□ -1.4
VPS13A-201ENST00000355766 FER1L5A0AVI2 2057 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 ACANP16112 2415 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 LOC102723996A0A087X1L8 192 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 TRAV20A0A0B4J274 112 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 A0A1W2PQD3 144 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 OR5H15A6NDH6 313 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 PRAMEF25A6NGN4 478 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 SAGE2PA6NJ88 616 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 E9PLN8 166 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 AP3D1O14617 1153 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 FFAR1O14842 300 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 BCKDKO14874 412 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 HS6ST1O60243 411 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 SNAP29O95721 258 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 IL33O95760 270 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 F10P00742 488 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 CLPSP04118 112 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 IFNA16P05015 189 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 CT62P0C5K7 136 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 CCDC159P0C7I6 412 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 CT45A8P0DMV1 189 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 CT45A9P0DMV2 189 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 IL7RP16871 459 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 NAGAP17050 411 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 TTKP33981 857 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 GABRA3P34903 492 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 RBM34P42696 430 aaKnown RBP6.3□□□□□ -1.4
VPS13A-201ENST00000355766 UGT2B15P54855 530 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 CDH12P55289 794 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 ID2Q02363 134 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 APOFQ13790 326 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 ZNF267Q14586 743 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-201ENST00000355766 TRAM2Q15035 370 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 NSDHLQ15738 373 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 DECR1Q16698 335 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 MINDY4Q4G0A6 757 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 FLYWCH1Q4VC44 716 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 CT45A2Q5DJT8 189 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 RBM48Q5RL73 367 aaKnown RBP6.3□□□□□ -1.4
VPS13A-201ENST00000355766 DCST1Q5T197 706 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 ZNF691Q5VV52 312 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 RPL13AP3Q6NVV1 102 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 ZNF836Q6ZNA1 936 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 SHISA6Q6ZSJ9 500 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 Q71RC1 249 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-201ENST00000355766 ZNF550Q7Z398 422 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 NUP54Q7Z3B4 507 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 GALNT10Q86SR1 603 aa6.3□□□□□ -1.4
VPS13A-201ENST00000355766 MISPQ8IVT2 679 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms