RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 PIP5K1CO60331 668 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 RAMP1O60894 148 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 RRM2P31350 389 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 H3F3AP84243 136 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 FOXF2Q12947 444 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 TMEM99Q8N816 258 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 RNF128Q8TEB7 428 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 ABHD3Q8WU67 409 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 RND1Q92730 232 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 INTS12Q96CB8 462 aaKnown RBP19.79■□□□□ 0.76
SHMT1-203ENST00000354098 RSRC1Q96IZ7 334 aaKnown RBP19.79■□□□□ 0.76
SHMT1-203ENST00000354098 HS6ST2Q96MM7 605 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 ZNF347Q96SE7 839 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 SLC19A3Q9BZV2 496 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 CLEC4AQ9UMR7 237 aa19.79■□□□□ 0.76
SHMT1-203ENST00000354098 PHF3Q92576 2039 aaKnown RBP19.78■□□□□ 0.76
SHMT1-203ENST00000354098 ARHGAP21Q5T5U3 1957 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 A0A087WUU8 490 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 TRBV4-1A0A0J9YWV2 114 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 A0A1W2PRQ8 180 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 OR2T1O43869 369 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 RCBTB2O95199 551 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 IL2RAP01589 272 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 BGLAPP02818 100 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 DGCR6Q14129 220 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 KPNB1Q14974 876 aaKnown RBP19.78■□□□□ 0.76
SHMT1-203ENST00000354098 FGD3Q5JSP0 725 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 PODNL1Q6PEZ8 512 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 CCDC71Q8IV32 467 aaPredicted RBP19.78■□□□□ 0.76
SHMT1-203ENST00000354098 C10orf53Q8N6V4 93 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 CCM2LQ9NUG4 571 aaPredicted RBP19.78■□□□□ 0.76
SHMT1-203ENST00000354098 DNPH1O43598 174 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 ZG16O60844 167 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 GADD45GO95257 159 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 CH25HO95992 272 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 FCGR2AP12318 317 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 PER3P56645 1201 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 SEC23BQ15437 767 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 RIPPLY2Q5TAB7 128 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 MEX3DQ86XN8 651 aaKnown RBP19.78■□□□□ 0.76
SHMT1-203ENST00000354098 LRRC17Q8N6Y2 441 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 ACOT11Q8WXI4 607 aaPredicted RBP19.78■□□□□ 0.76
SHMT1-203ENST00000354098 ZHX1-C8orf76Q96EF9 292 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 RAB3IPQ96QF0 476 aaPredicted RBP19.78■□□□□ 0.76
SHMT1-203ENST00000354098 FUZQ9BT04 418 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 ANKRD19PQ9H560 264 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 KLHL13Q9P2N7 655 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 RNF6Q9Y252 685 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 MED31Q9Y3C7 131 aa19.78■□□□□ 0.76
SHMT1-203ENST00000354098 ENO4A6NNW6 628 aa19.77■□□□□ 0.76
SHMT1-203ENST00000354098 EIF1BO60739 113 aaKnown RBP19.77■□□□□ 0.76
SHMT1-203ENST00000354098 FKBP6O75344 327 aa19.77■□□□□ 0.76
SHMT1-203ENST00000354098 GRPRP30550 384 aa19.77■□□□□ 0.76
SHMT1-203ENST00000354098 ZNF74Q16587 644 aa19.77■□□□□ 0.76
SHMT1-203ENST00000354098 OTUD3Q5T2D3 398 aaPredicted RBP19.77■□□□□ 0.76
SHMT1-203ENST00000354098 PAQR6Q6TCH4 344 aa19.77■□□□□ 0.76
SHMT1-203ENST00000354098 ZNF730Q6ZMV8 503 aa19.77■□□□□ 0.76
SHMT1-203ENST00000354098 NRMQ8IXM6 262 aa19.77■□□□□ 0.76
SHMT1-203ENST00000354098 PAPD5Q8NDF8 572 aaKnown RBP19.77■□□□□ 0.76
SHMT1-203ENST00000354098 VNN3Q9NY84 501 aa19.77■□□□□ 0.76
SHMT1-203ENST00000354098 ING1Q9UK53 422 aaPredicted RBP19.77■□□□□ 0.76
SHMT1-203ENST00000354098 TENM4Q6N022 2769 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 M0R082 166 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 CYTIPO60759 359 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 RNF224P0DH78 156 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 TMIGD3P0DMS9 266 aaPredicted RBP19.76■□□□□ 0.75
SHMT1-203ENST00000354098 P2RY4P51582 365 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 ACTR3P61158 418 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 PPP1R8Q12972 351 aaKnown RBP19.76■□□□□ 0.75
SHMT1-203ENST00000354098 MTFR2Q6P444 385 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 OR6S1Q8NH40 331 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 ZNF417Q8TAU3 575 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 ZNF587Q96SQ5 575 aaPredicted RBP19.76■□□□□ 0.75
SHMT1-203ENST00000354098 KLHL4Q9C0H6 718 aa19.76■□□□□ 0.75
SHMT1-203ENST00000354098 DENND2DQ9H6A0 471 aaPredicted RBP19.76■□□□□ 0.75
SHMT1-203ENST00000354098 FZD7O75084 574 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 AGFG2O95081 481 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 LDLRP01130 860 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 IFI30P13284 250 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 RASGEF1BQ0VAM2 473 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 ABLIM2Q6H8Q1 611 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 OR2T5Q6IEZ7 315 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 OR2A2Q6IF42 318 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 MBOAT2Q6ZWT7 520 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 SLC46A3Q7Z3Q1 461 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 LIX1LQ8IVB5 337 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 KDM8Q8N371 416 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 OR2T29Q8NH02 315 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 ZNF775Q96BV0 537 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-203ENST00000354098 PSD2Q9BQI7 771 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 NAA11Q9BSU3 229 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-203ENST00000354098 LYVE1Q9Y5Y7 322 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 HELZ2Q9BYK8 2649 aaKnown RBP19.75■□□□□ 0.75
SHMT1-203ENST00000354098 DOCK7Q96N67 2140 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 AQP7P3A6NL99 342 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 HSPB2A8KAH6 182 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 CST1P01037 141 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 GTF2E2P29084 291 aaKnown RBP19.75■□□□□ 0.75
SHMT1-203ENST00000354098 SMIM11AP58511 58 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 CDSNQ15517 529 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms