RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 IGFLR1Q9H665 355 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 TP53BP1Q12888 1972 aaPredicted RBP20.57■□□□□ 0.88
TRIM28-202ENST00000341753 PCP4L1A6NKN8 68 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 CREBL2O60519 120 aaPredicted RBP20.57■□□□□ 0.88
TRIM28-202ENST00000341753 ADH7P40394 386 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 MAZP56270 477 aaKnown RBP20.57■□□□□ 0.88
TRIM28-202ENST00000341753 ACTC1P68032 377 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 ACTA1P68133 377 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 BAMBIQ13145 260 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF273Q14593 569 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 GXYLT1Q4G148 440 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 ADAMTSL4Q6UY14 1074 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 SYNPRQ8TBG9 265 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 THEM6Q8WUY1 208 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 CD93Q9NPY3 652 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 C2orf16Q68DN1 1984 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 GABARAPH6UMI1 98 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 SELENOFO60613 162 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 HIST1H1CP16403 213 aaKnown RBP20.56■□□□□ 0.88
TRIM28-202ENST00000341753 PTH2RP49190 550 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 EPHA4P54764 986 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 TMEM69Q5SWH9 247 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 ZC3H14Q6PJT7 736 aaKnown RBP20.56■□□□□ 0.88
TRIM28-202ENST00000341753 OVCH1Q7RTY7 1134 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 C7orf61Q8IZ16 206 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 PLA2G2FQ9BZM2 168 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 ARL6Q9H0F7 186 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 SLC6A17Q9H1V8 727 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 TAS2R10Q9NYW0 307 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 TBC1D3EA0A087X179 549 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 TBC1D3KA0A087X1G2 549 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 TBC1D3FA6NER0 549 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF860A6NHJ4 632 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 IFITM5A6NNB3 132 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 FAM171A2A8MVW0 826 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 NGFRP08138 427 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 GIPP09681 153 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-202ENST00000341753 TMIGD3P0DMS9 266 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-202ENST00000341753 IFNGR1P15260 489 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 TBC1D3GQ6DHY5 549 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 TMPRSS11FQ6ZWK6 438 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 LCORQ96JN0 433 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-202ENST00000341753 EMC3Q9P0I2 261 aa20.56■□□□□ 0.88
TRIM28-202ENST00000341753 A0A1W2PP55 124 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 GALR3O60755 368 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-202ENST00000341753 PTP4A3O75365 173 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 DPP4P27487 766 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 P2RX1P51575 399 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 PLAURQ03405 335 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 GPM6BQ13491 265 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 CEBPEQ15744 281 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 DCST2Q5T1A1 773 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 ZAR1Q86SH2 424 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 SLC35F2Q8IXU6 374 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 RNF113BQ8IZP6 322 aaKnown RBP20.55■□□□□ 0.88
TRIM28-202ENST00000341753 OR6V1Q8N148 313 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 SGTBQ96EQ0 304 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF578Q96N58 590 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-202ENST00000341753 C2orf42Q9NWW7 574 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 ADAM18Q9Y3Q7 739 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 OR2M5A3KFT3 312 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 C4BPBP20851 252 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 GJA4P35212 333 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 ATRAIDQ6UW56 229 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 VITQ6UXI7 678 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF619Q8N2I2 560 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 DNAAF1Q8NEP3 725 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 TSPAN10Q9H1Z9 355 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-202ENST00000341753 MCCC2Q9HCC0 563 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 PFDN2Q9UHV9 154 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 A0A1B0GVT2 93 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 C1QTNF3-AMACRE9PGA6 284 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 PYCARD-AS1I3L0S3 204 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 PDCD5O14737 125 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 RNGTTO60942 597 aaKnown RBP20.55■□□□□ 0.88
TRIM28-202ENST00000341753 ECDO95905 644 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-202ENST00000341753 EN2P19622 333 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-202ENST00000341753 CDK2P24941 298 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 SEC13P55735 322 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 PLA2G7Q13093 441 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 FGL2Q14314 439 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 DEFB134Q4QY38 66 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 FBXO46Q6PJ61 603 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-202ENST00000341753 TMUB2Q71RG4 321 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 OR2L8Q8NGY9 312 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 CNN2Q99439 309 aaKnown RBP20.55■□□□□ 0.88
TRIM28-202ENST00000341753 PLEKHA1Q9HB21 404 aa20.55■□□□□ 0.88
TRIM28-202ENST00000341753 SPTBP11277 2137 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 F5P12259 2224 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 RP2O75695 350 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 VSIG10L2P0DP72 767 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 NID1P14543 1247 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 IL32P24001 234 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 S100A11P31949 105 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 H2BFSP57053 126 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 RAP2BP61225 183 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 SEC61A1P61619 476 aaKnown RBP20.54■□□□□ 0.88
TRIM28-202ENST00000341753 DHODHQ02127 395 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 STX4Q12846 297 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF626Q68DY1 528 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms