RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ZNF567Q8N184 647 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 BEND2Q8NDZ0 799 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 RPS10P5Q9NQ39 176 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SMIM28A0A1B0GU29 152 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 A0A1B0GV90 55 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 AZIN1O14977 448 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 FGBP02675 491 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TNFSF4P23510 183 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 DLSTP36957 453 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF91Q05481 1191 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZC2HC1AQ96GY0 325 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SPIN1Q9Y657 262 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 M0R143 59 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TSPAN15O95858 294 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 C4BPAP04003 597 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CEBPBP17676 345 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 POLR2JP52435 117 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CRB2Q5IJ48 1285 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 NAGSQ8N159 534 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZCCHC14Q8WYQ9 949 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF471Q9BX82 626 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MASP2O00187 686 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 IGF2P01344 180 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ALDOAP04075 364 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 RLN2P04090 185 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR5H8P0DN80 308 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CYP2A6P11509 494 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 AVPR1BP47901 424 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GPR33Q49SQ1 333 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 LIPKQ5VXJ0 399 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 C3P1Q6ZMU1 363 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MGME1Q9BQP7 344 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM72A0PK05 275 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 IDSB3KWA1 339 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 D6RAR5 112 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SLC2A10O95528 541 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ASGR1P07306 291 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TFPIP10646 304 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 RPL13AP40429 203 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SHEQ5VZ18 495 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SLC29A4Q7RTT9 530 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CCDC54Q8NEL0 328 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR4C15Q8NGM1 316 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SMARCD1Q96GM5 515 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 LMLNQ96KR4 655 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 UTP23Q9BRU9 249 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 HSF4Q9ULV5 492 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 POLR2GP62487 172 aaKnown RBP eCLIP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TRAM2Q15035 370 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 AGERQ15109 404 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ALKAL2Q6UX46 152 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PRSS42Q7Z5A4 293 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 DERL2Q9GZP9 239 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 FAM96BQ9Y3D0 163 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 FAM209BQ5JX69 171 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 RBM45Q8IUH3 476 aaKnown RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 C14orf79Q96F83 325 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CNTNAP3BQ96NU0 1288 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR51I1Q9H343 314 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ACTR8Q9H981 624 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM184CQ9NVA4 438 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SNX11Q9Y5W9 270 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 A8MXK9 166 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 HSBP1O75506 76 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 AIFM1O95831 613 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TPOP07202 933 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 EDNRAP25101 427 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 S100A10P60903 97 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SPIN4Q56A73 249 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GPC2Q8N158 579 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 RFLNBQ8N5W9 214 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MS4A3Q96HJ5 214 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 F2RL3Q96RI0 385 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 KCNJ15Q99712 375 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SPACA1Q9HBV2 294 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 WBP1LQ9NX94 342 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OAZ3Q9UMX2 235 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GPR45Q9Y5Y3 372 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 A0A1B0GUH1 482 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CLDN8P56748 225 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM41BQ5BJD5 291 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ESPNLQ6ZVH7 1005 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 HIST2H3AQ71DI3 136 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 THAP4Q8WY91 577 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ELOVL1Q9BW60 279 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR8D2Q9GZM6 311 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SNX15Q9NRS6 342 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 RNF150Q9ULK6 438 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TEX13CA0A0J9YWL9 993 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 STBD1O95210 358 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 NFYBP25208 207 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CDH12P55289 794 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MLLT11Q13015 90 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SLC35D2Q76EJ3 337 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GCDHQ92947 438 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 COQ8BQ96D53 544 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GABARAPL3Q9BY60 117 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZDHHC11Q9H8X9 412 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 IGKV6D-41A0A0C4DH26 115 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TRABD2BA6NFA1 517 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms