RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 CT45A10P0DMU9 189 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 SELPP16109 830 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 EIF4HQ15056 248 aaKnown RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 THEM4Q5T1C6 240 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 ABHD15Q6UXT9 468 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 IMP4Q96G21 291 aaKnown RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 TMEM19Q96HH6 336 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 MTHFD2LQ9H903 347 aaPredicted RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 RIMS3Q9UJD0 308 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 PCDHGA9Q9Y5G4 932 aaKnown RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 C1orf226A1L170 272 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 C1GALT1C1LP0DN25 315 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 DNAJB1P25685 340 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 OR7A5Q15622 319 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 SMAD2Q15796 467 aaKnown RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 NRARPQ7Z6K4 114 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 CLECL1Q8IZS7 167 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 NETO1Q8TDF5 533 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 ZFYVE21Q9BQ24 234 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 PARD6AQ9NPB6 346 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 VDAC3Q9Y277 283 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 PTPRZ1P23471 2315 aaPredicted RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 UMAD1C9J7I0 102 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 SCAMP2O15127 329 aaKnown RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 PROZP22891 400 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 MRPL19P49406 292 aaKnown RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 ZNF776Q68DI1 518 aaPredicted RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 OR4C11Q6IEV9 310 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 FBXL22Q6P050 247 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 BLOC1S3Q6QNY0 202 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 CMASQ8NFW8 434 aaPredicted RBP12.03□□□□□ -0.48
USP47-202ENST00000339865 TTYH3Q9C0H2 523 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 STC2O76061 302 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 NDUFB2O95178 105 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 RAB40ALP0C0E4 278 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 SMIM17P0DL12 118 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 ZNF28P17035 718 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 Q6ZRG5 221 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 NLRC3Q7RTR2 1065 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 IRF2BP1Q8IU81 584 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 CSNK1A1LQ8N752 337 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 OR2G3Q8NGZ4 309 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 ANGPTL6Q8NI99 470 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 RAB40AQ8WXH6 277 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 MACROD1Q9BQ69 325 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 DBX1A6NMT0 343 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 SOCS5O75159 536 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 TTRP02766 147 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 SPI1P17947 270 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 KCNQ1P51787 676 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 TAS2R38P59533 333 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 SOWAHAQ2M3V2 549 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 NDUFAF7Q7L592 441 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 HSD17B11Q8NBQ5 300 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 CHRDQ9H2X0 955 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 PDE7BQ9NP56 450 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 TLR9Q9NR96 1032 aa12.03□□□□□ -0.48
USP47-202ENST00000339865 FAXDC2Q96IV6 333 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 NTMT1Q9BV86 223 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 H3BVH4 76 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 PSMB2P49721 201 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 ZNF90Q03938 601 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 PHLDA2Q53GA4 152 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 MFSD6LQ8IWD5 586 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 FGGYQ96C11 551 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 BMFQ96LC9 184 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 RAB6CQ9H0N0 254 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 C5AR2Q9P296 337 aa12.02□□□□□ -0.48
USP47-202ENST00000339865 ZNFX1Q9P2E3 1918 aaKnown RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 SLC16A6O15403 523 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 COMMD1Q8N668 190 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 DCLRE1CQ96SD1 692 aaKnown RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 SPACA1Q9HBV2 294 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 SORBS2O94875 1100 aaKnown RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 ADRB1P08588 477 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 CSN1S1P47710 185 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 EPHA5P54756 1037 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 RPS15AP62244 130 aaKnown RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 RANP62826 216 aaKnown RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 OR5I1Q13606 314 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 TIFABQ6ZNK6 161 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 ZNF573Q86YE8 665 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 LAX1Q8IWV1 398 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 LMNTD1Q8N9Z9 388 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 L3MBTL4Q8NA19 623 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 OR4F5Q8NH21 305 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 OR4F4Q96R69 305 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 ANKRD19PQ9H560 264 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 DDX31Q9H8H2 851 aaKnown RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 ARNT2Q9HBZ2 717 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 HEYLQ9NQ87 328 aaPredicted RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 NOCTQ9UK39 431 aaKnown RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 YIPF1Q9Y548 306 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 ZC3H13Q5T200 1668 aaKnown RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 KIF1AQ12756 1690 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 PLSCR1O15162 318 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 SMPD1P17405 629 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 UBE2IP63279 158 aaKnown RBP12.02□□□□□ -0.49
USP47-202ENST00000339865 TMEM97Q5BJF2 176 aa12.02□□□□□ -0.49
USP47-202ENST00000339865 SLC6A19Q695T7 634 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms