RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 UMAD1C9J7I0 102 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 ZNF44P15621 663 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 CR2P20023 1033 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SFTPDP35247 375 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 RFC3P40938 356 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 CDKN2DP55273 166 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 NSDHLQ15738 373 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 PXDC1Q5TGL8 231 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 CLMPQ9H6B4 373 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 RNF19AQ9NV58 838 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SHANK1Q9Y566 2161 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 NAGAP17050 411 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 HTR2CP28335 458 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 LRRC26Q2I0M4 334 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 KIRREL1Q96J84 757 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 LOC100289279A0A1B0GTE1 492 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 MAKP20794 623 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 GDNFP39905 211 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 NRLP54845 237 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 RPS18P62269 152 aaKnown RBP13.36□□□□□ -0.27
COL7A1-201ENST00000328333 PLXDC1Q8IUK5 500 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 ZNF485Q8NCK3 441 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 CRLF2Q9HC73 371 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 ANKRD34BA5PLL1 514 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 P04436 131 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 THBS1P07996 1170 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 GRM7Q14831 915 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 OR2L13Q8N349 312 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 OR13C2Q8NGS9 318 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 EMP2P54851 167 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 ADIRFQ15847 76 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 TCTE3Q8IZS6 198 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 OR51L1Q8NGJ5 315 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 ACKR4Q9NPB9 350 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 PHLPP1O60346 1717 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 DPP4P27487 766 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 ISCA2Q86U28 154 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 ZNF321PQ8N8H1 164 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 KCNJ15Q99712 375 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 IFT22Q9H7X7 185 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 OR4Q2P0C623 313 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 MS4A2Q01362 244 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 CHRNEQ04844 493 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 EEF1A2Q05639 463 aaKnown RBP13.36□□□□□ -0.27
COL7A1-201ENST00000328333 TMPRSS9Q7Z410 1059 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 ARV1Q9H2C2 271 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 IGSF5Q9NSI5 407 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 POU2F3Q9UKI9 436 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 XKRY2A2RUG3 117 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 MTX2O75431 263 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 TACR1P25103 407 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 OR4D1Q15615 310 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 LCN10Q6JVE6 187 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 ACOT7LQ6ZUV0 252 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 KLHDC8AQ8IYD2 350 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 DNAJC5GQ8N7S2 189 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 SLC7A6Q92536 515 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 ZDHHC5Q9C0B5 715 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 YIPF1Q9Y548 306 aa13.36□□□□□ -0.27
COL7A1-201ENST00000328333 TRAPPC2LH3BP13 241 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 AKR1C1Q04828 323 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 USP51Q70EK9 711 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 WDR92Q96MX6 357 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 EGLN3Q9H6Z9 239 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 C8orf33Q9H7E9 229 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ARAP2Q8WZ64 1704 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 LDB2O43679 373 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ADAMTS4O75173 837 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ZNF239Q16600 458 aaKnown RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 CYP27C1Q4G0S4 372 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 CARD17Q5XLA6 110 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 TXNRD3NBQ6F5E7 133 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 FRMD1Q8N878 549 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 SLC30A3Q99726 388 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 DPH7Q9BTV6 452 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ACSS1Q9NUB1 689 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 TRBV23OR9-2A0A075B6M9 112 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 PLSCR5A0PG75 271 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ATP1B1P05026 303 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ADH4P08319 380 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 MGST1P10620 155 aaKnown RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 LCTLQ6UWM7 567 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 RBM23Q86U06 439 aaKnown RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 CPNE4Q96A23 557 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 KLF15Q9UIH9 416 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 SCO2O43819 266 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 ZP3P21754 424 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 C21orf33P30042 268 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 HNF1BP35680 557 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 PDE7AQ13946 482 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 LGALS14Q8TCE9 139 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 TECTBQ96PL2 329 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 SLC29A1Q99808 456 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 IGKV6D-41A0A0C4DH26 115 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 E5RGE8 158 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 CT45A10P0DMU9 189 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 SLC6A20Q9NP91 592 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 CFAP20Q9Y6A4 193 aaKnown RBP13.35□□□□□ -0.27
COL7A1-201ENST00000328333 TCRBP04435 133 aa13.35□□□□□ -0.27
COL7A1-201ENST00000328333 DCAF7P61962 342 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms