RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 NUBP2Q9Y5Y2 271 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 FANCAO15360 1455 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 TRBV2A0A0J9YWF9 115 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 TRAPPC2LH3BP13 241 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 M0R3H8 397 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 BMP4P12644 408 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 OR1D5P58170 312 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 TGFB2P61812 414 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF542PQ5EBM4 170 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF691Q5VV52 312 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM225Q6GV28 225 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 FAM151BQ6UXP7 276 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 FBXO22Q8NEZ5 403 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 OR2I1PQ8NGU4 316 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 FBXL20Q96IG2 436 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 HSPB7Q9UBY9 170 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 TRAPPC2LQ9UL33 140 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 ASTN1O14525 1302 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 A0A087WV62 115 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L15C9J2P7 530 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L13C9JLJ4 530 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L11C9JVI0 530 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L18D6R9N7 530 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L22D6RA61 530 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L17D6RBQ6 530 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L19D6RCP7 530 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L20D6RJB6 530 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 EGFP01133 1207 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 NAGAP17050 411 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 BMP5P22003 454 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 NFYAP23511 347 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L24Q0WX57 530 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 MSMO1Q15800 293 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 SOWAHAQ2M3V2 549 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 PMS2CLQ68D20 193 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 TFAP2EQ6VUC0 442 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 MARC2Q969Z3 335 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 ADTRPQ96IZ2 230 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 DCLRE1CQ96SD1 692 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 RSRP1Q9BUV0 290 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 SHARPINQ9H0F6 387 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 ZDHHC7Q9NXF8 308 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 DNAJB9Q9UBS3 223 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 M0QZK8 103 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 GPR31O00270 319 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 TRAFD1O14545 582 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 GEMIN2O14893 280 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 GGCTO75223 188 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 OR7C1O76099 320 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 STATHP02808 62 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 IGHV4-34P06331 123 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 FBXO45P0C2W1 286 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 GLB1P16278 677 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 RFX5P48382 616 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 MFAP5Q13361 173 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 HLA-BQ31612 363 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 HSF5Q4G112 596 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM108Q6UXF1 575 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 RNF130Q86XS8 419 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF100Q8IYN0 542 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 FBXL16Q8N461 479 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 KCNG3Q8TAE7 436 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 HTR3CQ8WXA8 447 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM191AQ9H0A3 160 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 GTSF1LQ9H1H1 148 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 DCP1AQ9NPI6 582 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 OR14J1Q9UGF5 321 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 CSAG2Q9Y5P2 127 aa7.16□□□□□ -1.26
LIMCH1-201ENST00000313860 MPIG6BO95866 241 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 HPNP05981 417 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 GGT1P19440 569 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 GPR143P51810 404 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 SNRPEP62304 92 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 POLR2LP62875 67 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 PDE7AQ13946 482 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 RNPS1Q15287 305 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 IAH1Q2TAA2 248 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 OR5A1Q8NGJ0 315 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 BCL2L2Q92843 193 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF300Q96RE9 604 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 HBEGFQ99075 208 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 PITX2Q99697 317 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 HDHD5Q9BXW7 423 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 CHODLQ9H9P2 273 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 RANGRFQ9HD47 186 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 RNF146Q9NTX7 359 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 OXSMQ9NWU1 459 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 EXOSC1Q9Y3B2 195 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 TIMM9Q9Y5J7 89 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 TARBP1Q13395 1621 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF727A8MUV8 499 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 HDAC3O15379 428 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 CBSLP0DN79 551 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 HTN1P15515 57 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 CBSP35520 551 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 LIPAP38571 399 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 HSPA7P48741 367 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 ENDOGQ14249 297 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 CTXN3Q4LDR2 81 aa7.15□□□□□ -1.26
LIMCH1-201ENST00000313860 SFT2D3Q587I9 215 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms