RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 URGCP-MRPS24S4R325 110 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 ANTXRLA6NF34 631 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM88BA6NKF7 163 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 HCRTO43612 131 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 CBX7O95931 251 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 SNCAP37840 140 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 OPRD1P41143 372 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 MTNR1BP49286 362 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 ARSDP51689 593 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 TRA2BP62995 288 aaKnown RBP12.96□□□□□ -0.33
CSPG4-201ENST00000308508 TAF9Q16594 264 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 BLACEA4D250 179 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 IER5LQ5T953 404 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 FRMPD2BQ6IN97 320 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 SFXN4Q6P4A7 337 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 KCNRGQ8N5I3 272 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 DEFB119Q8N690 84 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 CMTM2Q8TAZ6 248 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 IGSF8Q969P0 613 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 MRPL38Q96DV4 380 aaKnown RBP12.96□□□□□ -0.33
CSPG4-201ENST00000308508 GPR45Q9Y5Y3 372 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM131LA2VDJ0 1609 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 GATMP50440 423 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 LCTLQ6UWM7 567 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 LGALS14Q8TCE9 139 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 POFUT1Q9H488 388 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 HRASLSQ9HDD0 168 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 NPIPA5A0A0B4J1W7 369 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 TCRBV21S2A2A0A5A6 115 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 A6NCN8 305 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 SIX6O95475 246 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 CHRM4P08173 479 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 HTR2CP28335 458 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 XCR1P46094 333 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 PGGT1BP53609 377 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 TESK1Q15569 626 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 LTB4RQ15722 352 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 SSX7Q7RTT5 188 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 INTS12Q96CB8 462 aaKnown RBP12.96□□□□□ -0.34
CSPG4-201ENST00000308508 SEC22AQ96IW7 307 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 ZFYVE21Q9BQ24 234 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF331Q9NQX6 463 aaPredicted RBP12.96□□□□□ -0.34
CSPG4-201ENST00000308508 MCTS1Q9ULC4 181 aaKnown RBP12.96□□□□□ -0.34
CSPG4-201ENST00000308508 BET1O15155 118 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 TUSC2O75896 110 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 GTDC1Q4AE62 458 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 TMUB2Q71RG4 321 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 CBLL1Q75N03 491 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 SCLYQ96I15 445 aa12.96□□□□□ -0.34
CSPG4-201ENST00000308508 SPRYD7Q5W111 196 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 DOK4Q8TEW6 326 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF251Q9BRH9 671 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 CLMPQ9H6B4 373 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 DVL1O14640 695 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 SDC1P18827 310 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 PTBP1P26599 531 aaKnown RBP eCLIP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 DVL1P1P54792 670 aaPredicted RBP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 HRH3Q9Y5N1 445 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 PARP4Q9UKK3 1724 aaKnown RBP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 MCRIP1C9JLW8 97 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 MEP1BQ16820 701 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 RNF113BQ8IZP6 322 aaKnown RBP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 KDF1Q8NAX2 398 aaPredicted RBP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 GPR26Q8NDV2 337 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 ALOXE3Q9BYJ1 711 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 OR14J1Q9UGF5 321 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 APOBEC3BQ9UH17 382 aaKnown RBP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 FAM96BQ9Y3D0 163 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 TACR3P29371 465 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF91Q05481 1191 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 CLINT1Q14677 625 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 PCK2Q16822 640 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 TPPP3Q9BW30 176 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 C17orf105B2RV13 164 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 SOCS6O14544 535 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 KLF8O95600 359 aaPredicted RBP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 FAM74A1Q5RGS3 127 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 NTMT1Q9BV86 223 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 FOXE1O00358 373 aaPredicted RBP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 SLC16A7O60669 478 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 SLC11A1P49279 550 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 HHEXQ03014 270 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 CTSL3PQ5NE16 218 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 SGIP1Q9BQI5 828 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 GPR160Q9UJ42 338 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 NAV1Q8NEY1 1877 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 OR2T7P0C7T2 308 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 ACRP10323 421 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 GM2AP17900 193 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 RANP62826 216 aaKnown RBP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 OR1Q1Q15612 314 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 BTNL8Q6UX41 500 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 OR2T27Q8NH04 317 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 KHSRPQ92945 711 aaKnown RBP eCLIP12.95□□□□□ -0.34
CSPG4-201ENST00000308508 SFXN2Q96NB2 322 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 CAMK2AQ9UQM7 478 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 PRELID3BQ9Y3B1 194 aa12.95□□□□□ -0.34
CSPG4-201ENST00000308508 FAM183AA6NL82 134 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 ZFP92A6NM28 416 aa12.94□□□□□ -0.34
CSPG4-201ENST00000308508 SNCGO76070 127 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms