RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CTSAP10619 480 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 ITPKBP27987 946 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 PPP2CBP62714 309 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 PPP2CAP67775 309 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 PRAMEF14Q5SWL7 426 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 RAB12Q6IQ22 244 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 MBOAT2Q6ZWT7 520 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 GID4Q8IVV7 300 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 FAM219AQ8IW50 185 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 SDR9C7Q8NEX9 313 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 PAQR8Q8TEZ7 354 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 MRPL48Q96GC5 212 aaKnown RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 HHIPL1Q96JK4 782 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 SGPP1Q9BX95 441 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 SIDT1Q9NXL6 827 aaKnown RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 AKAP7Q9P0M2 348 aaPredicted RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 ATG4BQ9Y4P1 393 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 SCN10AQ9Y5Y9 1956 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 CTDSPLO15194 276 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 TXNL1O43396 289 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 LCMT2O60294 686 aaKnown RBP12.4□□□□□ -0.42
SKA3-201ENST00000298260 FADS1O60427 444 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 AQP8O94778 261 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 MC3RP41968 323 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 GMFBP60983 142 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 TGM3Q08188 693 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 STX4Q12846 297 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 C22orf39Q6P5X5 142 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 SVBPQ8N300 66 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 OR9A1PQ8NGU1 263 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 GAS2L1Q99501 681 aaPredicted RBP12.4□□□□□ -0.42
SKA3-201ENST00000298260 FAM117AQ9C073 453 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 KLHL31Q9H511 634 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 MKL2Q9ULH7 1088 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 ANAPC1Q9H1A4 1944 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 COL4A3Q01955 1670 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 UNC119BA6NIH7 251 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 ZNF705EA8MWA4 302 aaPredicted RBP12.4□□□□□ -0.42
SKA3-201ENST00000298260 SNRPGP15A8MWD9 76 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 GREM1O60565 184 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 EIF1BO60739 113 aaKnown RBP12.4□□□□□ -0.42
SKA3-201ENST00000298260 TYRP14679 529 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 PTAFRP25105 342 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 EIF1P41567 113 aaKnown RBP12.4□□□□□ -0.42
SKA3-201ENST00000298260 TAS2R20P59543 309 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 AP3S2P59780 193 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 IL10RAQ13651 578 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 FNDC3BQ53EP0 1204 aaKnown RBP12.4□□□□□ -0.42
SKA3-201ENST00000298260 LY6G6FQ5SQ64 297 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 C9orf64Q5T6V5 341 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 PWWP2BQ6NUJ5 590 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 UBE3DQ7Z6J8 389 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 ASPGQ86U10 573 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 OR7D2Q96RA2 312 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 VRK1Q99986 396 aaPredicted RBP12.4□□□□□ -0.42
SKA3-201ENST00000298260 MEPEQ9NQ76 525 aaPredicted RBP12.4□□□□□ -0.42
SKA3-201ENST00000298260 FBXL3Q9UKT7 428 aa12.4□□□□□ -0.42
SKA3-201ENST00000298260 LOC100509620A0A075B734 347 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 A0A1B0GTH9 108 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 GNB5O14775 395 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 SCAMP1O15126 338 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 OR1F1O43749 312 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 RPP14O95059 124 aaKnown RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 PAK4O96013 591 aaPredicted RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 BMP7P18075 431 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 KHKP50053 298 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 AVPI1Q5T686 147 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 FAM109BQ6ICB4 259 aaPredicted RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 JMJD6Q6NYC1 403 aaPredicted RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 ZNF793Q6ZN11 406 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 PCSK9Q8NBP7 692 aaKnown RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 CNRIP1Q96F85 164 aaPredicted RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 S100A16Q96FQ6 103 aaKnown RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 EXO5Q9H790 373 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 PLEKHA1Q9HB21 404 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 NRIP3Q9NQ35 241 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 MED17Q9NVC6 651 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 TRAV1-2A0A0B4J238 106 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 C4orf51C9J302 202 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 IL5P05113 134 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 RPA2P15927 270 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 EFNB2P52799 333 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 SNTB1Q13884 538 aaKnown RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 CDK5R1Q15078 307 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 C9orf152Q5JTZ5 239 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 FAM129CQ86XR2 697 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 LILRB2Q8N423 598 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 OR52L1Q8NGH7 329 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 C1QTNF2Q9BXJ5 285 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 MS4A8Q9BY19 250 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 TREM1Q9NP99 234 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 GHRLQ9UBU3 117 aa12.39□□□□□ -0.43
SKA3-201ENST00000298260 MTCL1Q9Y4B5 1905 aaKnown RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 MDC1Q14676 2089 aaKnown RBP12.39□□□□□ -0.43
SKA3-201ENST00000298260 MYO9BQ13459 2157 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 CPED1A4D0V7 1026 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 NRG2O14511 850 aaPredicted RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 PQBP1O60828 265 aaKnown RBP12.38□□□□□ -0.43
SKA3-201ENST00000298260 FKTNO75072 461 aa12.38□□□□□ -0.43
SKA3-201ENST00000298260 ARL6IP5O75915 188 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms