RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ANKMY1Q9P2S6 941 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 RIMS3Q9UJD0 308 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 CBR1P16152 277 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 SHC2P98077 582 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 SORDQ00796 357 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 GALNT1Q10472 559 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 RTL8BQ17RB0 113 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 KIRREL1Q96J84 757 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC25A18Q9H1K4 315 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 VAPAQ9P0L0 249 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 PISDQ9UG56 409 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 PLRG1O43660 514 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC43A1O75387 559 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 CXCR4P61073 352 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC6A18Q96N87 628 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 SPOCK3Q9BQ16 436 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 PLK3Q9H4B4 646 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 EMC7Q9NPA0 242 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 PPP1R3AQ16821 1122 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 TMEM239Q8WW34 195 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 DISP1Q96F81 1524 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 NRP1O14786 923 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 TBX18O95935 607 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 TGM1P22735 817 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 GAB1Q13480 694 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 WBP2NLQ6ICG8 309 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 MDGA2Q7Z553 956 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 CPOQ8IVL8 374 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 TCTN2Q96GX1 697 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 C1QTNF2Q9BXJ5 285 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 C11orf49Q9H6J7 331 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 SELENOWP63302 87 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 FRMPD2BQ6IN97 320 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 ADGRG5Q8IZF4 528 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC7A5P1Q8MH63 180 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC35B2Q8TB61 432 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 RPS26P62854 115 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 KIAA0141Q14154 515 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 TEAD2Q15562 447 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 CLEC4CQ8WTT0 213 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 CNOT2Q9NZN8 540 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 URGCP-MRPS24S4R325 110 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 TMEM200CA6NKL6 621 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 SSTR2P30874 369 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 GABRA5P31644 462 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF239Q16600 458 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 LTC4SQ16873 150 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 NPSR1Q6W5P4 371 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 THNSL2Q86YJ6 484 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 TMEM217Q8N7C4 229 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 WNT11O96014 354 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 FUT1P19526 365 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 ECM1Q16610 540 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 KLHDC8BQ8IXV7 354 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 SFT2D1Q8WV19 159 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 KPTNQ9Y664 436 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF91Q05481 1191 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 VWA1Q6PCB0 445 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 OR2T11Q8NH01 316 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 BARHL1Q9BZE3 327 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 METTL17Q9H7H0 456 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 DNMT3BQ9UBC3 853 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 IER3IP1Q9Y5U9 82 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 KIF13AQ9H1H9 1805 aa13.04□□□□□ -0.32
CCDC88A-201ENST00000263630 LRRC3CA6NJW4 275 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 AQP7O14520 342 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 ACVRL1P37023 503 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 EMC10Q5UCC4 262 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 ENTHD1Q8IYW4 607 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 OR10Z1Q8NGY1 313 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC2A6Q9UGQ3 507 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 PCDHGA9Q9Y5G4 932 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 TMEM269A0A1B0GVZ9 245 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 PHF1O43189 567 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 F3P13726 295 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 RELAQ04206 551 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 PLAC9Q5JTB6 97 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC51BQ86UW2 128 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 SCML1Q9UN30 329 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 DUOX1Q9NRD9 1551 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC10A6Q3KNW5 377 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 MMP21Q8N119 569 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 CREBZFQ9NS37 354 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 RNGTTO60942 597 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 LEFTY1O75610 366 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 KLF8O95600 359 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 FBP1P09467 338 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 LIPCP11150 499 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 GCSHP23434 173 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 GSCP56915 257 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 CDK5R2Q13319 367 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 NDUFAF7Q7L592 441 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 OR13C8Q8NGS7 320 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 MED30Q96HR3 178 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 CMTM3Q96MX0 182 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 MED9Q9NWA0 146 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 EMC9Q9Y3B6 208 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF487B1APH4 448 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 PHOX2AO14813 284 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 PDGFBP01127 241 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms