RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 OR7A5Q15622 319 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 CSRP2Q16527 193 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 DECR1Q16698 335 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 SWI5Q1ZZU3 235 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 FNDC3BQ53EP0 1204 aaKnown RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 OR2AK2Q8NG84 335 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 OR4C16Q8NGL9 310 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 TMEM239Q8WW34 195 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 RNF215Q9Y6U7 377 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 IFITM5A6NNB3 132 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 PRSS44E7EML9 344 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 GABARAPH6UMI1 98 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 CXCL14O95715 111 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 CCL5P13501 91 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 NFYBP25208 207 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 HTR2AP28223 471 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 CAPZA2P47755 286 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 AP3S2P59780 193 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 MANEAQ5SRI9 462 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 MPP7Q5T2T1 576 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 PARS2Q7L3T8 475 aaKnown RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 HSD17B13Q7Z5P4 300 aaPredicted RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 ZNF761Q86XN6 746 aaPredicted RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 OR1S2Q8NGQ3 325 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 DEFB118Q96PH6 123 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 RNF208Q9H0X6 261 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 DNTTIP1Q9H147 329 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 NRIP3Q9NQ35 241 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 HCFC1R1Q9NWW0 138 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 ANKRD10Q9NXR5 420 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 OR5V1Q9UGF6 321 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 ST6GALNAC2Q9UJ37 374 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 GTF2A1LQ9UNN4 478 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 FARSAQ9Y285 508 aaKnown RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 PLEKHA6Q9Y2H5 1048 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 PLEKHM1Q9Y4G2 1056 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 ECDO95905 644 aaPredicted RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 TYRP14679 529 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 RAG2P55895 527 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 RAB12Q6IQ22 244 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 LDLRAD3Q86YD5 345 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 CMIPQ8IY22 773 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 ACOT4Q8N9L9 421 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 C2orf15Q8WU43 125 aaKnown RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 PNPLA2Q96AD5 504 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 C2orf42Q9NWW7 574 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 ZNF443Q9Y2A4 671 aaPredicted RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 PPIL1Q9Y3C6 166 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 ZNF860A6NHJ4 632 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 ZNF705EA8MWA4 302 aaPredicted RBP13.21□□□□□ -0.29
SDC1-201ENST00000254351 SGCEO43556 437 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 WDPCPO95876 746 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 LAMP2P13473 410 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 C6P13671 934 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 RPS11P62280 158 aaKnown RBP eCLIP13.21□□□□□ -0.29
SDC1-201ENST00000254351 TMEM44Q2T9K0 475 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 HFEQ30201 348 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 HACD4Q5VWC8 232 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 RBMS3Q6XE24 437 aaKnown RBP13.21□□□□□ -0.29
SDC1-201ENST00000254351 KLHDC8AQ8IYD2 350 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 KCT2Q8NC54 265 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 NSMAFQ92636 917 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 WDR34Q96EX3 536 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 TSSK2Q96PF2 358 aa13.21□□□□□ -0.29
SDC1-201ENST00000254351 CPEB1Q9BZB8 566 aaKnown RBP13.21□□□□□ -0.29
SDC1-201ENST00000254351 ACSS1Q9NUB1 689 aaPredicted RBP13.21□□□□□ -0.29
SDC1-201ENST00000254351 PURGQ9UJV8 347 aaKnown RBP13.21□□□□□ -0.29
SDC1-201ENST00000254351 M0QYG6 137 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 DOK2O60496 412 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 FARS2O95363 451 aaKnown RBP13.21□□□□□ -0.3
SDC1-201ENST00000254351 ZNF3P17036 446 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 AK4P27144 223 aaPredicted RBP13.21□□□□□ -0.3
SDC1-201ENST00000254351 RPL4P36578 427 aaKnown RBP13.21□□□□□ -0.3
SDC1-201ENST00000254351 TAS2R20P59543 309 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 CDK5R1Q15078 307 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 OR1Q1Q15612 314 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 SCGB2B2Q4G0G5 96 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 LRRTM1Q86UE6 522 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 LINC00469Q8N7U9 141 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 FAM71CQ8NEG0 241 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 PAQR8Q8TEZ7 354 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 OVCA2Q8WZ82 227 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 ARHGDIGQ99819 225 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 C7orf50Q9BRJ6 194 aaKnown RBP13.21□□□□□ -0.3
SDC1-201ENST00000254351 BCL2L10Q9HD36 194 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 FOXJ3Q9UPW0 622 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 INSL5Q9Y5Q6 135 aa13.21□□□□□ -0.3
SDC1-201ENST00000254351 SULT1C2O00338 296 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 SC5DO75845 299 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 NDUFB6O95139 128 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 RAB13P51153 203 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 EFNB2P52799 333 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 BLOC1S1P78537 153 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 BDH1Q02338 343 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 KRT33BQ14525 404 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 ZNF805Q5CZA5 627 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 LY6G5CQ5SRR4 150 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 TMEM71Q6P5X7 295 aa13.2□□□□□ -0.3
SDC1-201ENST00000254351 METTL3Q86U44 580 aaKnown RBP13.2□□□□□ -0.3
SDC1-201ENST00000254351 CDK20Q8IZL9 346 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms