RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 COQ8AQ8NI60 647 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 C1orf216Q8TAB5 229 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 RGP1Q92546 391 aaPredicted RBP12.88□□□□□ -0.35
USH1C-201ENST00000005226 HSPA12BQ96MM6 686 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 CNN2Q99439 309 aaKnown RBP12.88□□□□□ -0.35
USH1C-201ENST00000005226 NKX3-1Q99801 234 aaPredicted RBP12.88□□□□□ -0.35
USH1C-201ENST00000005226 SRMSQ9H3Y6 488 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 THAP10Q9P2Z0 257 aaPredicted RBP12.88□□□□□ -0.35
USH1C-201ENST00000005226 NPTNQ9Y639 398 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 CACNA1IQ9P0X4 2223 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 A0A0B4J2E0 115 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 A0A1B0GX12 115 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 IFITM5A6NNB3 132 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 H0Y8X5 98 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 FMO6PO60774 539 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 DPP4P27487 766 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 SLC6A6P31641 620 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 PTH2RP49190 550 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 PSMA6P60900 246 aaKnown RBP12.88□□□□□ -0.35
USH1C-201ENST00000005226 ERVK-25P63136 954 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 HTR4Q13639 388 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 C2orf68Q2NKX9 166 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 FAM198BQ6UWH4 519 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 ALKAL2Q6UX46 152 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 SYNPRQ8TBG9 265 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 OR2A5Q96R48 311 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 SARGQ9BW04 601 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 ACTR6Q9GZN1 396 aa12.88□□□□□ -0.35
USH1C-201ENST00000005226 NPDC1Q9NQX5 325 aaPredicted RBP12.88□□□□□ -0.35
USH1C-201ENST00000005226 ARID1BQ8NFD5 2236 aaPredicted RBP12.87□□□□□ -0.35
USH1C-201ENST00000005226 OR6C68A6NDL8 312 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 POM121BA6NF01 834 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 OR2W5A6NFC9 320 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 KRT33AO76009 404 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 ZFPL1O95159 310 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 KAT7O95251 611 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 IFNGP01579 166 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 TLX1P31314 330 aaPredicted RBP12.87□□□□□ -0.35
USH1C-201ENST00000005226 TSFMP43897 325 aaKnown RBP12.87□□□□□ -0.35
USH1C-201ENST00000005226 MELKQ14680 651 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 KCNAB1Q14722 419 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 SEZ6L2Q6UXD5 910 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 OVCH1Q7RTY7 1134 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 SFTPA2Q8IWL1 248 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 MEIOBQ8N635 442 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 ZBTB44Q8NCP5 570 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 OR8K3Q8NH51 312 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 HAO2Q9NYQ3 351 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 OR5V1Q9UGF6 321 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 CHRNA9Q9UGM1 479 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 SLC17A4Q9Y2C5 497 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 SLC22A7Q9Y694 548 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 PTPRSQ13332 1948 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 L7N2F9 121 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 TIMP1P01033 207 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 IGKV1D-16P01601 117 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 OR2T7P0C7T2 308 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 CDK2P24941 298 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 ACAA2P42765 397 aaKnown RBP12.87□□□□□ -0.35
USH1C-201ENST00000005226 RAG2P55895 527 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 PON3Q15166 354 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 TUSC1Q2TAM9 212 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 RPL13AP3Q6NVV1 102 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 RPL22L1Q6P5R6 122 aaKnown RBP12.87□□□□□ -0.35
USH1C-201ENST00000005226 OR2T27Q8NH04 317 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 FCAMRQ8WWV6 532 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 TSACCQ96A04 125 aaPredicted RBP12.87□□□□□ -0.35
USH1C-201ENST00000005226 DNAJA3Q96EY1 480 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 WBP1Q96G27 269 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 SERINC2Q96SA4 455 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 APOOQ9BUR5 198 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 SLC17A9Q9BYT1 436 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 RNF215Q9Y6U7 377 aa12.87□□□□□ -0.35
USH1C-201ENST00000005226 KIAA0100Q14667 2235 aaKnown RBP12.86□□□□□ -0.35
USH1C-201ENST00000005226 MEIS3P1A6NDR6 274 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 CHURC1-FNTBB4DL54 471 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 HRKO00198 91 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 BRINP1O60477 761 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 CTSBP07858 339 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 RPS27P42677 84 aaKnown RBP12.86□□□□□ -0.35
USH1C-201ENST00000005226 P2RX1P51575 399 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 RPS15AP62244 130 aaKnown RBP12.86□□□□□ -0.35
USH1C-201ENST00000005226 PDGFRLQ15198 375 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 PRRT3Q5FWE3 981 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 TANGO2Q6ICL3 276 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 ARHGAP11AQ6P4F7 1023 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 KIRREL2Q6UWL6 708 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 C3P1Q6ZMU1 363 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 PRSS42Q7Z5A4 293 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 CDRT4Q8N9R6 151 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 DMRTA2Q96SC8 542 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 C7orf50Q9BRJ6 194 aaKnown RBP12.86□□□□□ -0.35
USH1C-201ENST00000005226 NANSQ9NR45 359 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 KLHL9Q9P2J3 617 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 ICAM5Q9UMF0 924 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 TBC1D3DA0A087WVF3 549 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 TBC1D3IA0A087WXS9 549 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 TCRBV16S1A1N1A0A5B0 115 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 PLSCR5A0PG75 271 aa12.86□□□□□ -0.35
USH1C-201ENST00000005226 TBC1D3LB9A6J9 549 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms