RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 IL15P40933 162 aaPredicted RBP20.65■□□□□ 0.9
CLN3-252ENST00000636907 IFIT5Q13325 482 aaKnown RBP20.65■□□□□ 0.9
CLN3-252ENST00000636907 TNNI3KQ59H18 835 aa20.65■□□□□ 0.9
CLN3-252ENST00000636907 SLC27A3Q5K4L6 730 aa20.65■□□□□ 0.9
CLN3-252ENST00000636907 GPATCH3Q96I76 525 aa20.65■□□□□ 0.9
CLN3-252ENST00000636907 AK7Q96M32 723 aa20.65■□□□□ 0.9
CLN3-252ENST00000636907 GREM2Q9H772 168 aa20.65■□□□□ 0.9
CLN3-252ENST00000636907 FPGT-TNNI3KV9GXZ4 949 aa20.65■□□□□ 0.9
CLN3-252ENST00000636907 CIAO1O76071 339 aa20.64■□□□□ 0.9
CLN3-252ENST00000636907 ARHGEF1Q92888 912 aaKnown RBP20.64■□□□□ 0.9
CLN3-252ENST00000636907 IPO9Q96P70 1041 aaKnown RBP20.64■□□□□ 0.9
CLN3-252ENST00000636907 PUS3Q9BZE2 481 aaKnown RBP20.64■□□□□ 0.9
CLN3-252ENST00000636907 EP400Q96L91 3159 aa20.64■□□□□ 0.9
CLN3-252ENST00000636907 C4AP0C0L4 1744 aa20.64■□□□□ 0.89
CLN3-252ENST00000636907 DDX60Q8IY21 1712 aaKnown RBP20.64■□□□□ 0.89
CLN3-252ENST00000636907 ERC2O15083 957 aa20.64■□□□□ 0.89
CLN3-252ENST00000636907 GLRX3O76003 335 aaKnown RBP20.64■□□□□ 0.89
CLN3-252ENST00000636907 HCLS1P14317 486 aaPredicted RBP20.64■□□□□ 0.89
CLN3-252ENST00000636907 RILPL2Q969X0 211 aa20.64■□□□□ 0.89
CLN3-252ENST00000636907 ZPR1O75312 459 aa20.63■□□□□ 0.89
CLN3-252ENST00000636907 MAP4K4O95819 1239 aaPredicted RBP20.63■□□□□ 0.89
CLN3-252ENST00000636907 ITGA6P23229 1130 aa20.63■□□□□ 0.89
CLN3-252ENST00000636907 TBC1D9BQ66K14 1250 aa20.63■□□□□ 0.89
CLN3-252ENST00000636907 C22orf23Q9BZE7 217 aa20.63■□□□□ 0.89
CLN3-252ENST00000636907 LAMB2P55268 1798 aa20.62■□□□□ 0.89
CLN3-252ENST00000636907 PHF14O94880 888 aa20.62■□□□□ 0.89
CLN3-252ENST00000636907 TAF7LQ5H9L4 462 aa20.62■□□□□ 0.89
CLN3-252ENST00000636907 POTEAQ6S8J7 498 aa20.62■□□□□ 0.89
CLN3-252ENST00000636907 CASC1Q6TDU7 716 aa20.62■□□□□ 0.89
CLN3-252ENST00000636907 FBXO3Q9UK99 471 aa20.62■□□□□ 0.89
CLN3-252ENST00000636907 ANKRD18BA2A2Z9 1011 aa20.61■□□□□ 0.89
CLN3-252ENST00000636907 TRAPPC3LQ5T215 181 aa20.61■□□□□ 0.89
CLN3-252ENST00000636907 BICDL1Q6ZP65 573 aa20.61■□□□□ 0.89
CLN3-252ENST00000636907 DBNLQ9UJU6 430 aaKnown RBP20.61■□□□□ 0.89
CLN3-252ENST00000636907 TXNRD1Q16881 649 aa20.6■□□□□ 0.89
CLN3-252ENST00000636907 PROM2Q8N271 834 aa20.6■□□□□ 0.89
CLN3-252ENST00000636907 GPR108Q9NPR9 543 aa20.6■□□□□ 0.89
CLN3-252ENST00000636907 UBR3Q6ZT12 1888 aa20.6■□□□□ 0.89
CLN3-252ENST00000636907 COL24A1Q17RW2 1714 aa20.59■□□□□ 0.89
CLN3-252ENST00000636907 MSH5O43196 834 aa20.59■□□□□ 0.89
CLN3-252ENST00000636907 RFC4P35249 363 aa20.59■□□□□ 0.89
CLN3-252ENST00000636907 CNTROBQ8N137 903 aa20.59■□□□□ 0.89
CLN3-252ENST00000636907 DDRGK1Q96HY6 314 aa20.59■□□□□ 0.89
CLN3-252ENST00000636907 AK9Q5TCS8 1911 aa20.59■□□□□ 0.89
CLN3-252ENST00000636907 EIF5BO60841 1220 aaKnown RBP20.58■□□□□ 0.89
CLN3-252ENST00000636907 HSP90B1P14625 803 aaKnown RBP20.58■□□□□ 0.89
CLN3-252ENST00000636907 ADRA2BP18089 450 aa20.58■□□□□ 0.89
CLN3-252ENST00000636907 CHMLP26374 656 aa20.58■□□□□ 0.89
CLN3-252ENST00000636907 ERFEQ4G0M1 354 aa20.58■□□□□ 0.89
CLN3-252ENST00000636907 DBNDD2Q9BQY9 259 aa20.58■□□□□ 0.89
CLN3-252ENST00000636907 ZNF609O15014 1411 aa20.58■□□□□ 0.89
CLN3-252ENST00000636907 SETDB2Q96T68 719 aa20.58■□□□□ 0.88
CLN3-252ENST00000636907 CEP126Q9P2H0 1117 aa20.58■□□□□ 0.88
CLN3-252ENST00000636907 LRP5O75197 1615 aa20.57■□□□□ 0.88
CLN3-252ENST00000636907 RIC1Q4ADV7 1423 aa20.57■□□□□ 0.88
CLN3-252ENST00000636907 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.57■□□□□ 0.88
CLN3-252ENST00000636907 LDHAL6AQ6ZMR3 332 aa20.57■□□□□ 0.88
CLN3-252ENST00000636907 RIPOR2Q9Y4F9 1068 aa20.57■□□□□ 0.88
CLN3-252ENST00000636907 PLSCR1O15162 318 aa20.56■□□□□ 0.88
CLN3-252ENST00000636907 APBA3O96018 575 aa20.56■□□□□ 0.88
CLN3-252ENST00000636907 RBM25P49756 843 aaKnown RBP20.56■□□□□ 0.88
CLN3-252ENST00000636907 NEUROD6Q96NK8 337 aa20.56■□□□□ 0.88
CLN3-252ENST00000636907 TIMM10P62072 90 aa20.55■□□□□ 0.88
CLN3-252ENST00000636907 CCDC152Q4G0S7 254 aa20.55■□□□□ 0.88
CLN3-252ENST00000636907 ESYT1Q9BSJ8 1104 aa20.55■□□□□ 0.88
CLN3-252ENST00000636907 BOLA2Q9H3K6 86 aa20.55■□□□□ 0.88
CLN3-252ENST00000636907 CNNM1Q9NRU3 951 aa20.55■□□□□ 0.88
CLN3-252ENST00000636907 RTL9Q8NET4 1388 aa20.55■□□□□ 0.88
CLN3-252ENST00000636907 A0A1B0GUL7 405 aa20.54■□□□□ 0.88
CLN3-252ENST00000636907 ATP5JP18859 108 aa20.54■□□□□ 0.88
CLN3-252ENST00000636907 NYXQ9GZU5 481 aa20.54■□□□□ 0.88
CLN3-252ENST00000636907 SEC31BQ9NQW1 1179 aa20.54■□□□□ 0.88
CLN3-252ENST00000636907 ABCC12Q96J65 1359 aa20.54■□□□□ 0.88
CLN3-252ENST00000636907 SSFA2P28290 1259 aa20.54■□□□□ 0.88
CLN3-252ENST00000636907 SLC10A5Q5PT55 438 aa20.54■□□□□ 0.88
CLN3-252ENST00000636907 NBPF5PQ86XG9 351 aaPredicted RBP20.54■□□□□ 0.88
CLN3-252ENST00000636907 EVI5LQ96CN4 794 aa20.54■□□□□ 0.88
CLN3-252ENST00000636907 TNS1Q9HBL0 1735 aaKnown RBP20.54■□□□□ 0.88
CLN3-252ENST00000636907 GTF2E1P29083 439 aaPredicted RBP20.53■□□□□ 0.88
CLN3-252ENST00000636907 METTL24Q5JXM2 366 aa20.53■□□□□ 0.88
CLN3-252ENST00000636907 C3orf67Q6ZVT6 689 aa20.53■□□□□ 0.88
CLN3-252ENST00000636907 USP26Q9BXU7 913 aa20.53■□□□□ 0.88
CLN3-252ENST00000636907 AKAP2Q9Y2D5 859 aa20.53■□□□□ 0.88
CLN3-252ENST00000636907 CASZ1Q86V15 1759 aa20.52■□□□□ 0.88
CLN3-252ENST00000636907 REC8O95072 547 aa20.51■□□□□ 0.87
CLN3-252ENST00000636907 HMGB2P26583 209 aaKnown RBP20.51■□□□□ 0.87
CLN3-252ENST00000636907 NFIXQ14938 502 aa20.51■□□□□ 0.87
CLN3-252ENST00000636907 SF3B3Q15393 1217 aaKnown RBP20.51■□□□□ 0.87
CLN3-252ENST00000636907 VGLL2Q8N8G2 317 aa20.51■□□□□ 0.87
CLN3-252ENST00000636907 TPTE2Q6XPS3 522 aa20.5■□□□□ 0.87
CLN3-252ENST00000636907 IL25Q9H293 177 aa20.5■□□□□ 0.87
CLN3-252ENST00000636907 CARMIL3Q8ND23 1372 aa20.5■□□□□ 0.87
CLN3-252ENST00000636907 COL4A1P02462 1669 aa20.49■□□□□ 0.87
CLN3-252ENST00000636907 GYS1P13807 737 aa20.49■□□□□ 0.87
CLN3-252ENST00000636907 ADORA1P30542 326 aa20.49■□□□□ 0.87
CLN3-252ENST00000636907 ZNF827Q17R98 1081 aa20.49■□□□□ 0.87
CLN3-252ENST00000636907 XAGE2Q96GT9 111 aa20.49■□□□□ 0.87
CLN3-252ENST00000636907 MPHOSPH8Q99549 860 aa20.49■□□□□ 0.87
CLN3-252ENST00000636907 MROH5Q6ZUA9 1318 aa20.49■□□□□ 0.87
CLN3-252ENST00000636907 SPEF2Q9C093 1822 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms