RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 SKILP12757 684 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 U2AF1Q01081 240 aaKnown RBP eCLIP7.99□□□□□ -1.13
SCN1A-213ENST00000636759 FMNL3Q8IVF7 1028 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 PHACTR3Q96KR7 559 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 PAIP2Q9BPZ3 127 aaKnown RBP7.99□□□□□ -1.13
SCN1A-213ENST00000636759 NRBP1Q9UHY1 535 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 PRR36Q9H6K5 1346 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 FIBPO43427 364 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 IL13P35225 146 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 TXNDC2Q86VQ3 553 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 CACTINQ8WUQ7 758 aaKnown RBP7.99□□□□□ -1.13
SCN1A-213ENST00000636759 TACO1Q9BSH4 297 aaKnown RBP7.99□□□□□ -1.13
SCN1A-213ENST00000636759 PIK3C2AO00443 1686 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 IPO8O15397 1037 aaKnown RBP7.99□□□□□ -1.13
SCN1A-213ENST00000636759 SNW1Q13573 536 aaKnown RBP7.99□□□□□ -1.13
SCN1A-213ENST00000636759 GNL2Q13823 731 aaKnown RBP7.99□□□□□ -1.13
SCN1A-213ENST00000636759 ERC1Q8IUD2 1116 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 TBC1D22AQ8WUA7 517 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 ARHGAP45Q92619 1136 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 ARFGAP3Q9NP61 516 aa7.99□□□□□ -1.13
SCN1A-213ENST00000636759 ZRANB2O95218 330 aaKnown RBP eCLIP7.98□□□□□ -1.13
SCN1A-213ENST00000636759 ZNF75DP51815 510 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 IRX1P78414 480 aaPredicted RBP7.98□□□□□ -1.13
SCN1A-213ENST00000636759 ERLIN2O94905 339 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 SEC31AO94979 1220 aaKnown RBP7.98□□□□□ -1.13
SCN1A-213ENST00000636759 EIF5P55010 431 aaKnown RBP7.98□□□□□ -1.13
SCN1A-213ENST00000636759 MAP9Q49MG5 647 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 HOMER1Q86YM7 354 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 TSPYL6Q8N831 410 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 NUDT16Q96DE0 195 aaKnown RBP7.98□□□□□ -1.13
SCN1A-213ENST00000636759 ZSCAN16Q9H4T2 348 aaPredicted RBP7.98□□□□□ -1.13
SCN1A-213ENST00000636759 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.98□□□□□ -1.13
SCN1A-213ENST00000636759 OVOS2A0A0J9YW53 1432 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 OVOS2Q6IE36 1432 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 KLHL33A6NCF5 533 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 ANKRD65E5RJM6 399 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 FCHSD2O94868 740 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 HMGB1P09429 215 aaKnown RBP7.98□□□□□ -1.13
SCN1A-213ENST00000636759 ERCC3P19447 782 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 SCP2P22307 547 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 AP1ARQ63HQ0 302 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 LUZP1Q86V48 1076 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 NBPF3Q9H094 633 aa7.98□□□□□ -1.13
SCN1A-213ENST00000636759 GOLGA6L19H0YKK7 550 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 CPP00450 1065 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 GSPT1P15170 499 aaKnown RBP7.97□□□□□ -1.13
SCN1A-213ENST00000636759 NF2P35240 595 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 MAP3K11Q16584 847 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 NYAP1Q6ZVC0 841 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 DDX11Q96FC9 970 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 PSMD1Q99460 953 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 SLC24A3Q9HC58 644 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 VPS18Q9P253 973 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 CEBPAP49715 358 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-213ENST00000636759 REXO1L1PQ8IX06 675 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 NUCKS1Q9H1E3 243 aaKnown RBP7.97□□□□□ -1.13
SCN1A-213ENST00000636759 CNPY2Q9Y2B0 182 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 TBX22Q9Y458 520 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 CCDC61Q9Y6R9 512 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 PLEKHG3A1L390 1219 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 NEDD9Q14511 834 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 HSP90B2PQ58FF3 399 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 JAKMIP3Q5VZ66 844 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 NAIF1Q69YI7 327 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-213ENST00000636759 TTC19Q6DKK2 380 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-213ENST00000636759 INTS4Q96HW7 963 aaKnown RBP7.97□□□□□ -1.13
SCN1A-213ENST00000636759 VEZTQ9HBM0 779 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 ORC3Q9UBD5 711 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-213ENST00000636759 KDM3BQ7LBC6 1761 aa7.97□□□□□ -1.13
SCN1A-213ENST00000636759 USP27XA6NNY8 438 aa7.96□□□□□ -1.13
SCN1A-213ENST00000636759 OTUD6BQ8N6M0 293 aa7.96□□□□□ -1.13
SCN1A-213ENST00000636759 ITFG2Q969R8 447 aa7.96□□□□□ -1.13
SCN1A-213ENST00000636759 ZNF428Q96B54 188 aa7.96□□□□□ -1.13
SCN1A-213ENST00000636759 SRRTQ9BXP5 876 aaKnown RBP7.96□□□□□ -1.13
SCN1A-213ENST00000636759 ACBD3Q9H3P7 528 aa7.96□□□□□ -1.13
SCN1A-213ENST00000636759 GNL3LQ9NVN8 582 aaKnown RBP7.96□□□□□ -1.13
SCN1A-213ENST00000636759 CRB1P82279 1406 aa7.96□□□□□ -1.13
SCN1A-213ENST00000636759 EIF3JO75822 258 aaKnown RBP7.96□□□□□ -1.14
SCN1A-213ENST00000636759 IPO7O95373 1038 aaKnown RBP7.96□□□□□ -1.14
SCN1A-213ENST00000636759 FBLN1P23142 703 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 LRRC8AQ8IWT6 810 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 ZNF513Q8N8E2 541 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-213ENST00000636759 TMEM87AQ8NBN3 555 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 NUP62CLQ9H1M0 184 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 USP6P35125 1406 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 MED1Q15648 1581 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-213ENST00000636759 USP31Q70CQ4 1352 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 TUBB4AP04350 444 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 TYRO3Q06418 890 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 CCAR2Q8N163 923 aaKnown RBP7.96□□□□□ -1.14
SCN1A-213ENST00000636759 FUCA2Q9BTY2 467 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 L2HGDHQ9H9P8 463 aa7.96□□□□□ -1.14
SCN1A-213ENST00000636759 CPSF2Q9P2I0 782 aaKnown RBP7.96□□□□□ -1.14
SCN1A-213ENST00000636759 GOLGA6L4A6NEF3 574 aa7.95□□□□□ -1.14
SCN1A-213ENST00000636759 CCDC158Q5M9N0 1113 aa7.95□□□□□ -1.14
SCN1A-213ENST00000636759 MIEF2Q96C03 454 aa7.95□□□□□ -1.14
SCN1A-213ENST00000636759 NCKAP5LQ9HCH0 1330 aa7.95□□□□□ -1.14
SCN1A-213ENST00000636759 CCDC69A6NI79 296 aa7.95□□□□□ -1.14
SCN1A-213ENST00000636759 DIAPH1O60610 1272 aaKnown RBP7.95□□□□□ -1.14
SCN1A-213ENST00000636759 ELF1P32519 619 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms