RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 GRAPQ13588 217 aa20.03■□□□□ 0.8
LINC00339-209ENST00000635450 DDX46Q7L014 1031 aaKnown RBP20.03■□□□□ 0.8
LINC00339-209ENST00000635450 GPC2Q8N158 579 aa20.03■□□□□ 0.8
LINC00339-209ENST00000635450 GRAPLQ8TC17 118 aaPredicted RBP20.03■□□□□ 0.8
LINC00339-209ENST00000635450 CELF1Q92879 486 aaKnown RBP20.03■□□□□ 0.8
LINC00339-209ENST00000635450 MYD88Q99836 296 aa20.03■□□□□ 0.8
LINC00339-209ENST00000635450 SCNN1DP51172 638 aa20.02■□□□□ 0.8
LINC00339-209ENST00000635450 GOLGA2Q08379 1002 aa20.02■□□□□ 0.8
LINC00339-209ENST00000635450 CCDC30Q5VVM6 783 aa20.02■□□□□ 0.8
LINC00339-209ENST00000635450 RIC3Q7Z5B4 369 aa20.02■□□□□ 0.8
LINC00339-209ENST00000635450 LDHDQ86WU2 507 aa20.02■□□□□ 0.8
LINC00339-209ENST00000635450 JARID2Q92833 1246 aaPredicted RBP20.02■□□□□ 0.8
LINC00339-209ENST00000635450 SP8Q8IXZ3 490 aa20.01■□□□□ 0.79
LINC00339-209ENST00000635450 JMYQ8N9B5 988 aa20.01■□□□□ 0.79
LINC00339-209ENST00000635450 RTFDC1Q9BY42 306 aaPredicted RBP20.01■□□□□ 0.79
LINC00339-209ENST00000635450 SCN9AQ15858 1988 aa20.01■□□□□ 0.79
LINC00339-209ENST00000635450 PASKQ96RG2 1323 aa20.01■□□□□ 0.79
LINC00339-209ENST00000635450 FANCIQ9NVI1 1328 aa20.01■□□□□ 0.79
LINC00339-209ENST00000635450 IRS4O14654 1257 aaPredicted RBP20■□□□□ 0.79
LINC00339-209ENST00000635450 EIF6P56537 245 aaKnown RBP20■□□□□ 0.79
LINC00339-209ENST00000635450 TRIM28Q13263 835 aaKnown RBP20■□□□□ 0.79
LINC00339-209ENST00000635450 TWISTNBQ3B726 338 aaPredicted RBP20■□□□□ 0.79
LINC00339-209ENST00000635450 DPP8Q6V1X1 898 aaPredicted RBP20■□□□□ 0.79
LINC00339-209ENST00000635450 NIM1KQ8IY84 436 aa20■□□□□ 0.79
LINC00339-209ENST00000635450 MIER1Q8N108 512 aa20■□□□□ 0.79
LINC00339-209ENST00000635450 MYH16Q9H6N6 1097 aa20■□□□□ 0.79
LINC00339-209ENST00000635450 CACNA1FO60840 1977 aa20■□□□□ 0.79
LINC00339-209ENST00000635450 BBOX1O75936 387 aa19.99■□□□□ 0.79
LINC00339-209ENST00000635450 SF3B3Q15393 1217 aaKnown RBP19.99■□□□□ 0.79
LINC00339-209ENST00000635450 GRIPAP1Q4V328 841 aa19.99■□□□□ 0.79
LINC00339-209ENST00000635450 G2E3Q7L622 706 aa19.99■□□□□ 0.79
LINC00339-209ENST00000635450 ITGBL1O95965 494 aaPredicted RBP19.98■□□□□ 0.79
LINC00339-209ENST00000635450 EPS15P42566 896 aa19.98■□□□□ 0.79
LINC00339-209ENST00000635450 MAP1SQ66K74 1059 aaPredicted RBP19.98■□□□□ 0.79
LINC00339-209ENST00000635450 MPNDQ8N594 471 aa19.98■□□□□ 0.79
LINC00339-209ENST00000635450 STK31Q9BXU1 1019 aa19.98■□□□□ 0.79
LINC00339-209ENST00000635450 KIAA2012Q0VF49 1180 aa19.97■□□□□ 0.79
LINC00339-209ENST00000635450 ZBTB38Q8NAP3 1195 aaPredicted RBP19.97■□□□□ 0.79
LINC00339-209ENST00000635450 GPR101Q96P66 508 aaPredicted RBP19.97■□□□□ 0.79
LINC00339-209ENST00000635450 METTL22Q9BUU2 404 aaPredicted RBP19.97■□□□□ 0.79
LINC00339-209ENST00000635450 SEC31BQ9NQW1 1179 aa19.97■□□□□ 0.79
LINC00339-209ENST00000635450 MAP3K2Q9Y2U5 619 aa19.97■□□□□ 0.79
LINC00339-209ENST00000635450 TRPM7Q96QT4 1865 aa19.96■□□□□ 0.79
LINC00339-209ENST00000635450 YDJCA8MPS7 323 aa19.96■□□□□ 0.79
LINC00339-209ENST00000635450 CXCL9Q07325 125 aa19.96■□□□□ 0.79
LINC00339-209ENST00000635450 CLEC11AQ9Y240 323 aa19.96■□□□□ 0.79
LINC00339-209ENST00000635450 IGKV5-2P06315 115 aa19.95■□□□□ 0.78
LINC00339-209ENST00000635450 GPSM2P81274 684 aa19.95■□□□□ 0.78
LINC00339-209ENST00000635450 EXOSC9Q06265 439 aaKnown RBP19.95■□□□□ 0.78
LINC00339-209ENST00000635450 FMR1Q06787 632 aaKnown RBP eCLIP19.95■□□□□ 0.78
LINC00339-209ENST00000635450 CCDC85AQ96PX6 553 aaPredicted RBP19.95■□□□□ 0.78
LINC00339-209ENST00000635450 TMX4Q9H1E5 349 aaPredicted RBP19.95■□□□□ 0.78
LINC00339-209ENST00000635450 SPINK5Q9NQ38 1064 aaPredicted RBP19.95■□□□□ 0.78
LINC00339-209ENST00000635450 MKRN1Q9UHC7 482 aaKnown RBP19.95■□□□□ 0.78
LINC00339-209ENST00000635450 ZNF521Q96K83 1311 aa19.95■□□□□ 0.78
LINC00339-209ENST00000635450 SHTN1A0MZ66 631 aa19.94■□□□□ 0.78
LINC00339-209ENST00000635450 PI4KAP2A4QPH2 592 aa19.94■□□□□ 0.78
LINC00339-209ENST00000635450 DDX58O95786 925 aaKnown RBP19.94■□□□□ 0.78
LINC00339-209ENST00000635450 PCCAP05165 728 aaPredicted RBP19.94■□□□□ 0.78
LINC00339-209ENST00000635450 PI4KAP1Q8N8J0 262 aa19.94■□□□□ 0.78
LINC00339-209ENST00000635450 CCDC191Q8NCU4 936 aa19.94■□□□□ 0.78
LINC00339-209ENST00000635450 SUPT20HQ8NEM7 779 aa19.94■□□□□ 0.78
LINC00339-209ENST00000635450 CREBZFQ9NS37 354 aa19.94■□□□□ 0.78
LINC00339-209ENST00000635450 CWC25Q9NXE8 425 aaPredicted RBP19.94■□□□□ 0.78
LINC00339-209ENST00000635450 ZNRF3Q9ULT6 936 aa19.94■□□□□ 0.78
LINC00339-209ENST00000635450 PSME4Q14997 1843 aa19.94■□□□□ 0.78
LINC00339-209ENST00000635450 RAD17O75943 681 aa19.93■□□□□ 0.78
LINC00339-209ENST00000635450 GMPSP49915 693 aaPredicted RBP19.93■□□□□ 0.78
LINC00339-209ENST00000635450 CWF19L2Q2TBE0 894 aaKnown RBP19.93■□□□□ 0.78
LINC00339-209ENST00000635450 POLLQ9UGP5 575 aa19.93■□□□□ 0.78
LINC00339-209ENST00000635450 ZNF646O15015 1829 aaPredicted RBP19.92■□□□□ 0.78
LINC00339-209ENST00000635450 LMOD1P29536 600 aaPredicted RBP19.92■□□□□ 0.78
LINC00339-209ENST00000635450 KSR2Q6VAB6 950 aa19.92■□□□□ 0.78
LINC00339-209ENST00000635450 TMC4Q7Z404 712 aa19.92■□□□□ 0.78
LINC00339-209ENST00000635450 PNMA8AQ86V59 439 aaPredicted RBP19.92■□□□□ 0.78
LINC00339-209ENST00000635450 CNTROBQ8N137 903 aa19.92■□□□□ 0.78
LINC00339-209ENST00000635450 GPRC5DQ9NZD1 345 aa19.92■□□□□ 0.78
LINC00339-209ENST00000635450 NSFL1CQ9UNZ2 370 aaKnown RBP19.92■□□□□ 0.78
LINC00339-209ENST00000635450 E9PSI1 815 aa19.91■□□□□ 0.78
LINC00339-209ENST00000635450 VAMP4O75379 141 aa19.91■□□□□ 0.78
LINC00339-209ENST00000635450 VPS33BQ9H267 617 aa19.91■□□□□ 0.78
LINC00339-209ENST00000635450 DBNDD1Q9H9R9 158 aa19.91■□□□□ 0.78
LINC00339-209ENST00000635450 CNTNAP1P78357 1384 aa19.91■□□□□ 0.78
LINC00339-209ENST00000635450 A0A1B0GUL6 1792 aa19.9■□□□□ 0.78
LINC00339-209ENST00000635450 RIMBP2O15034 1052 aa19.9■□□□□ 0.78
LINC00339-209ENST00000635450 SLC4A2P04920 1241 aa19.9■□□□□ 0.78
LINC00339-209ENST00000635450 RPS8P62241 208 aaKnown RBP19.9■□□□□ 0.78
LINC00339-209ENST00000635450 CIAPIN1Q6FI81 312 aa19.9■□□□□ 0.78
LINC00339-209ENST00000635450 PDE8AO60658 829 aa19.89■□□□□ 0.77
LINC00339-209ENST00000635450 RTL9Q8NET4 1388 aa19.89■□□□□ 0.77
LINC00339-209ENST00000635450 CDHR2Q9BYE9 1310 aa19.89■□□□□ 0.77
LINC00339-209ENST00000635450 KCNQ5Q9NR82 932 aa19.89■□□□□ 0.77
LINC00339-209ENST00000635450 POLR2AP24928 1970 aaKnown RBP19.88■□□□□ 0.77
LINC00339-209ENST00000635450 NEURL1BA8MQ27 555 aa19.88■□□□□ 0.77
LINC00339-209ENST00000635450 C6orf229H3BNL8 230 aa19.88■□□□□ 0.77
LINC00339-209ENST00000635450 TRAF5O00463 557 aa19.88■□□□□ 0.77
LINC00339-209ENST00000635450 HSPA1AP0DMV8 641 aaKnown RBP19.88■□□□□ 0.77
LINC00339-209ENST00000635450 HSPA1BP0DMV9 641 aaKnown RBP19.88■□□□□ 0.77
LINC00339-209ENST00000635450 FLIIQ13045 1269 aa19.88■□□□□ 0.77
LINC00339-209ENST00000635450 IFFO2Q5TF58 517 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms