RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 NGLY1Q96IV0 654 aa23.73■■□□□ 1.39
CHRNA4-209ENST00000627000 DNAJC2Q99543 621 aaKnown RBP23.73■■□□□ 1.39
CHRNA4-209ENST00000627000 LOC102724428A0A0B4J2F2 783 aa23.72■■□□□ 1.39
CHRNA4-209ENST00000627000 SIK1P57059 783 aa23.72■■□□□ 1.39
CHRNA4-209ENST00000627000 ITPK1Q13572 414 aa23.72■■□□□ 1.39
CHRNA4-209ENST00000627000 CIAO1O76071 339 aa23.72■■□□□ 1.39
CHRNA4-209ENST00000627000 CSF1RP07333 972 aa23.72■■□□□ 1.39
CHRNA4-209ENST00000627000 BCL9LQ86UU0 1499 aa23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 CCDC171Q6TFL3 1326 aa23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 ZNF609O15014 1411 aa23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 CRKLP46109 303 aaKnown RBP23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 GPR108Q9NPR9 543 aa23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 CDHR2Q9BYE9 1310 aa23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 CHGBP05060 677 aa23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 MCM2P49736 904 aa23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 EIF5P55010 431 aaKnown RBP23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 PRPF40BQ6NWY9 871 aaKnown RBP23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 HAUS7Q99871 368 aa23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 CCDC87Q9NVE4 849 aa23.71■■□□□ 1.39
CHRNA4-209ENST00000627000 UBN2Q6ZU65 1347 aa23.7■■□□□ 1.38
CHRNA4-209ENST00000627000 ERVV-1B6SEH8 477 aa23.7■■□□□ 1.38
CHRNA4-209ENST00000627000 PALLDQ8WX93 1383 aa23.7■■□□□ 1.38
CHRNA4-209ENST00000627000 PKP1Q13835 747 aa23.69■■□□□ 1.38
CHRNA4-209ENST00000627000 SNRKQ9NRH2 765 aa23.69■■□□□ 1.38
CHRNA4-209ENST00000627000 TRMT112Q9UI30 125 aaKnown RBP23.69■■□□□ 1.38
CHRNA4-209ENST00000627000 MYH14Q7Z406 1995 aaKnown RBP23.69■■□□□ 1.38
CHRNA4-209ENST00000627000 JCADQ9P266 1359 aa23.69■■□□□ 1.38
CHRNA4-209ENST00000627000 A0A1B0GUL7 405 aa23.69■■□□□ 1.38
CHRNA4-209ENST00000627000 DDX46Q7L014 1031 aaKnown RBP23.69■■□□□ 1.38
CHRNA4-209ENST00000627000 MED23Q9ULK4 1368 aa23.68■■□□□ 1.38
CHRNA4-209ENST00000627000 IFIT5Q13325 482 aaKnown RBP23.68■■□□□ 1.38
CHRNA4-209ENST00000627000 ZNF589Q86UQ0 364 aaPredicted RBP23.68■■□□□ 1.38
CHRNA4-209ENST00000627000 NECTIN1Q15223 517 aa23.68■■□□□ 1.38
CHRNA4-209ENST00000627000 VPS72Q15906 364 aa23.68■■□□□ 1.38
CHRNA4-209ENST00000627000 TTLL11Q8NHH1 800 aa23.68■■□□□ 1.38
CHRNA4-209ENST00000627000 CEP126Q9P2H0 1117 aa23.68■■□□□ 1.38
CHRNA4-209ENST00000627000 RBM8AQ9Y5S9 174 aaKnown RBP23.68■■□□□ 1.38
CHRNA4-209ENST00000627000 MYH3P11055 1940 aa23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 IRS4O14654 1257 aaPredicted RBP23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 CPA1P15085 419 aa23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 TAF7LQ5H9L4 462 aa23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 ZNF34Q8IZ26 560 aa23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 MAP4K1Q92918 833 aa23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 GREM2Q9H772 168 aa23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 CWC22Q9HCG8 908 aaKnown RBP23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 CUL4AQ13619 759 aa23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 ADCK5Q3MIX3 580 aa23.67■■□□□ 1.38
CHRNA4-209ENST00000627000 CTSWP56202 376 aa23.66■■□□□ 1.38
CHRNA4-209ENST00000627000 KCNB2Q92953 911 aa23.66■■□□□ 1.38
CHRNA4-209ENST00000627000 TTC14Q96N46 770 aa23.66■■□□□ 1.38
CHRNA4-209ENST00000627000 RREB1Q92766 1687 aa23.66■■□□□ 1.38
CHRNA4-209ENST00000627000 CYP2E1P05181 493 aaPredicted RBP23.65■■□□□ 1.38
CHRNA4-209ENST00000627000 ITGA6P23229 1130 aa23.65■■□□□ 1.38
CHRNA4-209ENST00000627000 GBP4Q96PP9 640 aa23.65■■□□□ 1.38
CHRNA4-209ENST00000627000 GOLIM4O00461 696 aa23.64■■□□□ 1.38
CHRNA4-209ENST00000627000 CASTP20810 708 aaKnown RBP23.64■■□□□ 1.38
CHRNA4-209ENST00000627000 KCNJ4P48050 445 aa23.64■■□□□ 1.38
CHRNA4-209ENST00000627000 CREB3L3Q68CJ9 461 aa23.64■■□□□ 1.38
CHRNA4-209ENST00000627000 FBXO3Q9UK99 471 aa23.64■■□□□ 1.38
CHRNA4-209ENST00000627000 DDX11L8A8MPP1 907 aa23.64■■□□□ 1.37
CHRNA4-209ENST00000627000 ADORA1P30542 326 aa23.64■■□□□ 1.37
CHRNA4-209ENST00000627000 NUCB2P80303 420 aa23.64■■□□□ 1.37
CHRNA4-209ENST00000627000 SEC62Q99442 399 aaKnown RBP23.64■■□□□ 1.37
CHRNA4-209ENST00000627000 LARP6Q9BRS8 491 aaKnown RBP23.64■■□□□ 1.37
CHRNA4-209ENST00000627000 CICQ96RK0 1608 aaPredicted RBP23.63■■□□□ 1.37
CHRNA4-209ENST00000627000 AK2P54819 239 aa23.63■■□□□ 1.37
CHRNA4-209ENST00000627000 KBTBD3Q8NAB2 608 aa23.63■■□□□ 1.37
CHRNA4-209ENST00000627000 JAKMIP1Q96N16 626 aaKnown RBP23.63■■□□□ 1.37
CHRNA4-209ENST00000627000 PAG1Q9NWQ8 432 aa23.63■■□□□ 1.37
CHRNA4-209ENST00000627000 FAM177BA6PVY3 158 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 TRAK2O60296 914 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 CAMTA2O94983 1202 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 SLFNL1Q499Z3 407 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 SUSD4Q5VX71 490 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 CCDC129Q6ZRS4 1044 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 PTF1AQ7RTS3 328 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 FNBP4Q8N3X1 1017 aaPredicted RBP23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 RFX7Q2KHR2 1363 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 RIC1Q4ADV7 1423 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 SLC27A2O14975 620 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 PDE8AO60658 829 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 TAF5LO75529 589 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 IFIT1P09914 478 aaKnown RBP23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 SMARCC1Q92922 1105 aaPredicted RBP23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 ZDHHC9Q9Y397 364 aa23.62■■□□□ 1.37
CHRNA4-209ENST00000627000 KCNQ4P56696 695 aa23.61■■□□□ 1.37
CHRNA4-209ENST00000627000 XAGE2Q96GT9 111 aa23.61■■□□□ 1.37
CHRNA4-209ENST00000627000 RIPOR2Q9Y4F9 1068 aa23.61■■□□□ 1.37
CHRNA4-209ENST00000627000 ANKRD18BA2A2Z9 1011 aa23.61■■□□□ 1.37
CHRNA4-209ENST00000627000 COL9A3Q14050 684 aaPredicted RBP23.61■■□□□ 1.37
CHRNA4-209ENST00000627000 LDHAL6AQ6ZMR3 332 aa23.61■■□□□ 1.37
CHRNA4-209ENST00000627000 TAF6LQ9Y6J9 622 aa23.61■■□□□ 1.37
CHRNA4-209ENST00000627000 COL5A3P25940 1745 aaPredicted RBP23.61■■□□□ 1.37
CHRNA4-209ENST00000627000 RUFY3Q7L099 469 aa23.6■■□□□ 1.37
CHRNA4-209ENST00000627000 AKAP2Q9Y2D5 859 aa23.6■■□□□ 1.37
CHRNA4-209ENST00000627000 BAG4O95429 457 aaKnown RBP23.59■■□□□ 1.37
CHRNA4-209ENST00000627000 ZKSCAN1P17029 563 aaPredicted RBP23.59■■□□□ 1.37
CHRNA4-209ENST00000627000 ZSWIM6Q9HCJ5 1215 aa23.59■■□□□ 1.37
CHRNA4-209ENST00000627000 USP21Q9UK80 565 aa23.59■■□□□ 1.37
CHRNA4-209ENST00000627000 METTL24Q5JXM2 366 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms