RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CTSWP56202 376 aa24.05■■□□□ 1.44
SQSTM1-216ENST00000626660 CCDC152Q4G0S7 254 aa24.05■■□□□ 1.44
SQSTM1-216ENST00000626660 DDX46Q7L014 1031 aaKnown RBP24.05■■□□□ 1.44
SQSTM1-216ENST00000626660 TMEM57Q8N5G2 664 aa24.05■■□□□ 1.44
SQSTM1-216ENST00000626660 USP44Q9H0E7 712 aa24.05■■□□□ 1.44
SQSTM1-216ENST00000626660 HDAC5Q9UQL6 1122 aa24.05■■□□□ 1.44
SQSTM1-216ENST00000626660 NBPF7P0C2Y1 421 aaPredicted RBP24.04■■□□□ 1.44
SQSTM1-216ENST00000626660 CRAMP1Q96RY5 1269 aa24.04■■□□□ 1.44
SQSTM1-216ENST00000626660 UBTFL1P0CB47 393 aaPredicted RBP24.03■■□□□ 1.44
SQSTM1-216ENST00000626660 ITPRIPQ8IWB1 547 aa24.03■■□□□ 1.44
SQSTM1-216ENST00000626660 ARFGEF1Q9Y6D6 1849 aa24.03■■□□□ 1.44
SQSTM1-216ENST00000626660 GNAI3P08754 354 aa24.02■■□□□ 1.44
SQSTM1-216ENST00000626660 RLBP1P12271 317 aa24.02■■□□□ 1.44
SQSTM1-216ENST00000626660 C1QTNF8P60827 252 aa24.02■■□□□ 1.44
SQSTM1-216ENST00000626660 PANK1Q8TE04 598 aa24.02■■□□□ 1.44
SQSTM1-216ENST00000626660 SLX4Q8IY92 1834 aa24.01■■□□□ 1.43
SQSTM1-216ENST00000626660 PRPF40BQ6NWY9 871 aaKnown RBP24.01■■□□□ 1.43
SQSTM1-216ENST00000626660 SUCLG2Q96I99 432 aa24.01■■□□□ 1.43
SQSTM1-216ENST00000626660 PDE3AQ14432 1141 aa24■■□□□ 1.43
SQSTM1-216ENST00000626660 TTLL11Q8NHH1 800 aa24■■□□□ 1.43
SQSTM1-216ENST00000626660 CCDC85AQ96PX6 553 aaPredicted RBP24■■□□□ 1.43
SQSTM1-216ENST00000626660 RRP1P56182 461 aaKnown RBP23.99■■□□□ 1.43
SQSTM1-216ENST00000626660 FOXO4P98177 505 aa23.99■■□□□ 1.43
SQSTM1-216ENST00000626660 GRAPQ13588 217 aa23.99■■□□□ 1.43
SQSTM1-216ENST00000626660 GRAPLQ8TC17 118 aaPredicted RBP23.99■■□□□ 1.43
SQSTM1-216ENST00000626660 MEIS3Q99687 375 aa23.99■■□□□ 1.43
SQSTM1-216ENST00000626660 CHD4Q14839 1912 aa23.99■■□□□ 1.43
SQSTM1-216ENST00000626660 GRIN3BO60391 1043 aa23.98■■□□□ 1.43
SQSTM1-216ENST00000626660 CSF1RP07333 972 aa23.98■■□□□ 1.43
SQSTM1-216ENST00000626660 YBX3P16989 372 aaKnown RBP eCLIP23.98■■□□□ 1.43
SQSTM1-216ENST00000626660 CHMP3Q9Y3E7 222 aa23.98■■□□□ 1.43
SQSTM1-216ENST00000626660 RTL9Q8NET4 1388 aa23.98■■□□□ 1.43
SQSTM1-216ENST00000626660 TAF1P21675 1872 aa23.98■■□□□ 1.43
SQSTM1-216ENST00000626660 BBOX1O75936 387 aa23.97■■□□□ 1.43
SQSTM1-216ENST00000626660 LMBR1LQ6UX01 489 aa23.97■■□□□ 1.43
SQSTM1-216ENST00000626660 CDC5LQ99459 802 aaKnown RBP23.97■■□□□ 1.43
SQSTM1-216ENST00000626660 TMX4Q9H1E5 349 aaPredicted RBP23.97■■□□□ 1.43
SQSTM1-216ENST00000626660 ZNF219Q9P2Y4 722 aaPredicted RBP23.97■■□□□ 1.43
SQSTM1-216ENST00000626660 PPEF1O14829 653 aaPredicted RBP23.96■■□□□ 1.43
SQSTM1-216ENST00000626660 EPHA10Q5JZY3 1008 aa23.96■■□□□ 1.43
SQSTM1-216ENST00000626660 SOGA3Q5TF21 947 aa23.96■■□□□ 1.43
SQSTM1-216ENST00000626660 BICC1Q9H694 974 aaKnown RBP23.96■■□□□ 1.43
SQSTM1-216ENST00000626660 GREM2Q9H772 168 aa23.96■■□□□ 1.43
SQSTM1-216ENST00000626660 SEC31BQ9NQW1 1179 aa23.96■■□□□ 1.43
SQSTM1-216ENST00000626660 UTRNP46939 3433 aa23.96■■□□□ 1.43
SQSTM1-216ENST00000626660 C21orf2O43822 256 aa23.95■■□□□ 1.42
SQSTM1-216ENST00000626660 MVPQ14764 893 aaKnown RBP23.95■■□□□ 1.42
SQSTM1-216ENST00000626660 FAM161AQ3B820 660 aa23.95■■□□□ 1.42
SQSTM1-216ENST00000626660 TMC4Q7Z404 712 aa23.95■■□□□ 1.42
SQSTM1-216ENST00000626660 KAZALD1Q96I82 304 aa23.95■■□□□ 1.42
SQSTM1-216ENST00000626660 COG6Q9Y2V7 657 aa23.95■■□□□ 1.42
SQSTM1-216ENST00000626660 ITGA6P23229 1130 aa23.94■■□□□ 1.42
SQSTM1-216ENST00000626660 RPS8P62241 208 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-216ENST00000626660 IFIT5Q13325 482 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-216ENST00000626660 ANKRD18AQ8IVF6 992 aa23.94■■□□□ 1.42
SQSTM1-216ENST00000626660 CELF1Q92879 486 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-216ENST00000626660 CHMP4BQ9H444 224 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-216ENST00000626660 DDX19BQ9UMR2 479 aa23.94■■□□□ 1.42
SQSTM1-216ENST00000626660 LRRFIP2Q9Y608 721 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-216ENST00000626660 ANKRD18BA2A2Z9 1011 aa23.93■■□□□ 1.42
SQSTM1-216ENST00000626660 GNAI2P04899 355 aa23.93■■□□□ 1.42
SQSTM1-216ENST00000626660 CCDC57Q2TAC2 916 aa23.93■■□□□ 1.42
SQSTM1-216ENST00000626660 RABL6Q3YEC7 729 aaPredicted RBP23.93■■□□□ 1.42
SQSTM1-216ENST00000626660 C20orf194Q5TEA3 1177 aa23.93■■□□□ 1.42
SQSTM1-216ENST00000626660 CC2D2BQ6DHV5 1058 aa23.93■■□□□ 1.42
SQSTM1-216ENST00000626660 CCDC93Q567U6 631 aa23.92■■□□□ 1.42
SQSTM1-216ENST00000626660 ANKRD44Q8N8A2 993 aa23.92■■□□□ 1.42
SQSTM1-216ENST00000626660 C7orf43Q8WVR3 580 aa23.92■■□□□ 1.42
SQSTM1-216ENST00000626660 ZBTB7BO15156 539 aaPredicted RBP23.91■■□□□ 1.42
SQSTM1-216ENST00000626660 IGHMBP2P38935 993 aaKnown RBP23.91■■□□□ 1.42
SQSTM1-216ENST00000626660 TAF7LQ5H9L4 462 aa23.91■■□□□ 1.42
SQSTM1-216ENST00000626660 ARHGAP27Q6ZUM4 889 aa23.91■■□□□ 1.42
SQSTM1-216ENST00000626660 ATP6V0A2Q9Y487 856 aa23.91■■□□□ 1.42
SQSTM1-216ENST00000626660 SPEF2Q9C093 1822 aa23.91■■□□□ 1.42
SQSTM1-216ENST00000626660 GRIPAP1Q4V328 841 aa23.9■■□□□ 1.42
SQSTM1-216ENST00000626660 SP8Q8IXZ3 490 aa23.9■■□□□ 1.42
SQSTM1-216ENST00000626660 RTKN2Q8IZC4 609 aa23.89■■□□□ 1.41
SQSTM1-216ENST00000626660 SUPT16HQ9Y5B9 1047 aaKnown RBP23.89■■□□□ 1.41
SQSTM1-216ENST00000626660 MPHOSPH8Q99549 860 aa23.88■■□□□ 1.41
SQSTM1-216ENST00000626660 COL4A1P02462 1669 aa23.88■■□□□ 1.41
SQSTM1-216ENST00000626660 FER1L6Q2WGJ9 1857 aa23.87■■□□□ 1.41
SQSTM1-216ENST00000626660 OLFM4Q6UX06 510 aa23.87■■□□□ 1.41
SQSTM1-216ENST00000626660 BSDC1Q9NW68 430 aaPredicted RBP23.87■■□□□ 1.41
SQSTM1-216ENST00000626660 LRRC37AA6NMS7 1700 aa23.87■■□□□ 1.41
SQSTM1-216ENST00000626660 CENPBP07199 599 aaPredicted RBP23.84■■□□□ 1.41
SQSTM1-216ENST00000626660 MPNDQ8N594 471 aa23.84■■□□□ 1.41
SQSTM1-216ENST00000626660 ZNF594Q96JF6 807 aaPredicted RBP23.84■■□□□ 1.41
SQSTM1-216ENST00000626660 TAOK3Q9H2K8 898 aa23.84■■□□□ 1.41
SQSTM1-216ENST00000626660 C1orf115Q9H7X2 142 aa23.84■■□□□ 1.41
SQSTM1-216ENST00000626660 MTX1Q13505 466 aa23.83■■□□□ 1.41
SQSTM1-216ENST00000626660 DPP8Q6V1X1 898 aaPredicted RBP23.83■■□□□ 1.41
SQSTM1-216ENST00000626660 LDHAL6AQ6ZMR3 332 aa23.83■■□□□ 1.41
SQSTM1-216ENST00000626660 CNNM1Q9NRU3 951 aa23.83■■□□□ 1.41
SQSTM1-216ENST00000626660 GOLGB1Q14789 3259 aaKnown RBP23.83■■□□□ 1.4
SQSTM1-216ENST00000626660 LTBP3Q9NS15 1303 aa23.83■■□□□ 1.4
SQSTM1-216ENST00000626660 NFKBIEO00221 500 aa23.82■■□□□ 1.4
SQSTM1-216ENST00000626660 SRGAP3O43295 1099 aa23.82■■□□□ 1.4
SQSTM1-216ENST00000626660 FKBP4Q02790 459 aaKnown RBP eCLIP23.82■■□□□ 1.42e-6■■□□□ 13.6
SQSTM1-216ENST00000626660 ZBTB40Q9NUA8 1239 aa23.82■■□□□ 1.4
SQSTM1-216ENST00000626660 ANKIB1Q9P2G1 1089 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms