RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 GRAPQ13588 217 aa31.03■■■□□ 2.56
CPSF1-214ENST00000622776 WDR43Q15061 677 aaKnown RBP eCLIP31.03■■■□□ 2.56
CPSF1-214ENST00000622776 GRAPLQ8TC17 118 aaPredicted RBP31.03■■■□□ 2.56
CPSF1-214ENST00000622776 ADARB2Q9NS39 739 aaKnown RBP31.03■■■□□ 2.56
CPSF1-214ENST00000622776 KIAA2012Q0VF49 1180 aa31.02■■■□□ 2.56
CPSF1-214ENST00000622776 HDGFL1Q5TGJ6 251 aa31.02■■■□□ 2.56
CPSF1-214ENST00000622776 PLBD2Q8NHP8 589 aa31.01■■■□□ 2.55
CPSF1-214ENST00000622776 ZNF428Q96B54 188 aa31.01■■■□□ 2.55
CPSF1-214ENST00000622776 HOXB7P09629 217 aa31■■■□□ 2.55
CPSF1-214ENST00000622776 GMPSP49915 693 aaPredicted RBP31■■■□□ 2.55
CPSF1-214ENST00000622776 TRAF5O00463 557 aa30.99■■■□□ 2.55
CPSF1-214ENST00000622776 CIAPIN1Q6FI81 312 aa30.99■■■□□ 2.55
CPSF1-214ENST00000622776 ANKRD13DQ6ZTN6 518 aa30.99■■■□□ 2.55
CPSF1-214ENST00000622776 ADAMTS8Q9UP79 889 aa30.99■■■□□ 2.55
CPSF1-214ENST00000622776 MAP2K1Q02750 393 aaPredicted RBP30.98■■■□□ 2.55
CPSF1-214ENST00000622776 CST9Q5W186 159 aa30.98■■■□□ 2.55
CPSF1-214ENST00000622776 TMC4Q7Z404 712 aa30.98■■■□□ 2.55
CPSF1-214ENST00000622776 DBF4Q9UBU7 674 aaPredicted RBP30.98■■■□□ 2.55
CPSF1-214ENST00000622776 LBX1P52954 281 aa30.97■■■□□ 2.55
CPSF1-214ENST00000622776 ISCA1Q9BUE6 129 aa30.97■■■□□ 2.55
CPSF1-214ENST00000622776 TAF1P21675 1872 aa30.96■■■□□ 2.55
CPSF1-214ENST00000622776 RAD17O75943 681 aa30.96■■■□□ 2.55
CPSF1-214ENST00000622776 TNIP1Q15025 636 aa30.96■■■□□ 2.55
CPSF1-214ENST00000622776 FAM89AQ96GI7 184 aa30.95■■■□□ 2.55
CPSF1-214ENST00000622776 CAPNS2Q96L46 248 aa30.95■■■□□ 2.55
CPSF1-214ENST00000622776 CFAP44Q96MT7 982 aa30.95■■■□□ 2.55
CPSF1-214ENST00000622776 BCL2L13Q9BXK5 485 aa30.95■■■□□ 2.55
CPSF1-214ENST00000622776 TRPM7Q96QT4 1865 aa30.95■■■□□ 2.54
CPSF1-214ENST00000622776 CDHR2Q9BYE9 1310 aa30.95■■■□□ 2.54
CPSF1-214ENST00000622776 ATP5J2-PTCD1G3V325 749 aa30.94■■■□□ 2.54
CPSF1-214ENST00000622776 ECE1P42892 770 aa30.94■■■□□ 2.54
CPSF1-214ENST00000622776 DUSP27Q5VZP5 1158 aa30.94■■■□□ 2.54
CPSF1-214ENST00000622776 PAXIP1Q6ZW49 1069 aaPredicted RBP30.94■■■□□ 2.54
CPSF1-214ENST00000622776 HYPKQ9NX55 129 aa30.94■■■□□ 2.54
CPSF1-214ENST00000622776 HSPA8P11142 646 aaKnown RBP30.93■■■□□ 2.54
CPSF1-214ENST00000622776 SF3B3Q15393 1217 aaKnown RBP30.93■■■□□ 2.54
CPSF1-214ENST00000622776 TLL2Q9Y6L7 1015 aa30.93■■■□□ 2.54
CPSF1-214ENST00000622776 YDJCA8MPS7 323 aa30.92■■■□□ 2.54
CPSF1-214ENST00000622776 CYP4F22Q6NT55 531 aa30.92■■■□□ 2.54
CPSF1-214ENST00000622776 PGAP2Q9UHJ9 254 aa30.92■■■□□ 2.54
CPSF1-214ENST00000622776 CELF1Q92879 486 aaKnown RBP30.91■■■□□ 2.54
CPSF1-214ENST00000622776 DUOX1Q9NRD9 1551 aa30.91■■■□□ 2.54
CPSF1-214ENST00000622776 GRM1Q13255 1194 aa30.9■■■□□ 2.54
CPSF1-214ENST00000622776 GPR101Q96P66 508 aaPredicted RBP30.9■■■□□ 2.54
CPSF1-214ENST00000622776 GLIS2Q9BZE0 524 aaPredicted RBP30.9■■■□□ 2.54
CPSF1-214ENST00000622776 MBIPQ9NS73 344 aa30.9■■■□□ 2.54
CPSF1-214ENST00000622776 DDX60Q8IY21 1712 aaKnown RBP30.9■■■□□ 2.54
CPSF1-214ENST00000622776 HIRAP54198 1017 aaPredicted RBP30.89■■■□□ 2.54
CPSF1-214ENST00000622776 TRIM28Q13263 835 aaKnown RBP30.89■■■□□ 2.54
CPSF1-214ENST00000622776 ZC3H15Q8WU90 426 aaKnown RBP30.89■■■□□ 2.54
CPSF1-214ENST00000622776 CNOT7Q9UIV1 285 aaKnown RBP30.89■■■□□ 2.54
CPSF1-214ENST00000622776 NSFL1CQ9UNZ2 370 aaKnown RBP30.89■■■□□ 2.54
CPSF1-214ENST00000622776 CELF2O95319 508 aaKnown RBP30.88■■■□□ 2.53
CPSF1-214ENST00000622776 RTL5Q5HYW3 569 aaPredicted RBP30.88■■■□□ 2.53
CPSF1-214ENST00000622776 TRPM4Q8TD43 1214 aa30.88■■■□□ 2.53
CPSF1-214ENST00000622776 LRRC37AA6NMS7 1700 aa30.87■■■□□ 2.53
CPSF1-214ENST00000622776 ZNF853P0CG23 659 aa30.87■■■□□ 2.53
CPSF1-214ENST00000622776 WASHC4Q2M389 1173 aa30.87■■■□□ 2.53
CPSF1-214ENST00000622776 SHTN1A0MZ66 631 aa30.86■■■□□ 2.53
CPSF1-214ENST00000622776 H7C1D1 291 aa30.86■■■□□ 2.53
CPSF1-214ENST00000622776 IRS4O14654 1257 aaPredicted RBP30.86■■■□□ 2.53
CPSF1-214ENST00000622776 SAPCD2Q86UD0 394 aa30.86■■■□□ 2.53
CPSF1-214ENST00000622776 THSD7BQ9C0I4 1608 aa30.85■■■□□ 2.53
CPSF1-214ENST00000622776 BEGAINQ9BUH8 593 aa30.85■■■□□ 2.53
CPSF1-214ENST00000622776 C6orf229H3BNL8 230 aa30.84■■■□□ 2.53
CPSF1-214ENST00000622776 GPSM2P81274 684 aa30.84■■■□□ 2.53
CPSF1-214ENST00000622776 CDC37L1Q7L3B6 337 aa30.84■■■□□ 2.53
CPSF1-214ENST00000622776 RIC3Q7Z5B4 369 aa30.84■■■□□ 2.53
CPSF1-214ENST00000622776 MICALL2Q8IY33 904 aa30.84■■■□□ 2.53
CPSF1-214ENST00000622776 PRKRIP1Q9H875 184 aaPredicted RBP30.84■■■□□ 2.53
CPSF1-214ENST00000622776 DBNDD1Q9H9R9 158 aa30.84■■■□□ 2.53
CPSF1-214ENST00000622776 POLLQ9UGP5 575 aa30.84■■■□□ 2.53
CPSF1-214ENST00000622776 RIMBP2O15034 1052 aa30.83■■■□□ 2.53
CPSF1-214ENST00000622776 GOLGA2Q08379 1002 aa30.83■■■□□ 2.53
CPSF1-214ENST00000622776 DPF2Q92785 391 aa30.83■■■□□ 2.53
CPSF1-214ENST00000622776 ZBTB12Q9Y330 459 aaPredicted RBP30.83■■■□□ 2.53
CPSF1-214ENST00000622776 PSMD14O00487 310 aa30.82■■■□□ 2.52
CPSF1-214ENST00000622776 APAF1O14727 1248 aa30.82■■■□□ 2.52
CPSF1-214ENST00000622776 MAP2K2P36507 400 aa30.82■■■□□ 2.52
CPSF1-214ENST00000622776 RPS8P62241 208 aaKnown RBP30.82■■■□□ 2.52
CPSF1-214ENST00000622776 IFT57Q9NWB7 429 aa30.82■■■□□ 2.52
CPSF1-214ENST00000622776 AOC2O75106 756 aa30.81■■■□□ 2.52
CPSF1-214ENST00000622776 PHAXQ9H814 394 aaKnown RBP30.81■■■□□ 2.52
CPSF1-214ENST00000622776 ZNF408Q9H9D4 720 aa30.81■■■□□ 2.52
CPSF1-214ENST00000622776 COL4A1P02462 1669 aa30.81■■■□□ 2.52
CPSF1-214ENST00000622776 ELL2O00472 640 aaPredicted RBP30.8■■■□□ 2.52
CPSF1-214ENST00000622776 GNAI1P63096 354 aa30.8■■■□□ 2.52
CPSF1-214ENST00000622776 ZBTB38Q8NAP3 1195 aaPredicted RBP30.8■■■□□ 2.52
CPSF1-214ENST00000622776 HHIPL1Q96JK4 782 aa30.8■■■□□ 2.52
CPSF1-214ENST00000622776 EYA3Q99504 573 aa30.8■■■□□ 2.52
CPSF1-214ENST00000622776 CALD1Q05682 793 aaKnown RBP30.79■■■□□ 2.52
CPSF1-214ENST00000622776 DOK7Q18PE1 504 aa30.78■■■□□ 2.52
CPSF1-214ENST00000622776 SAMD7Q7Z3H4 446 aa30.78■■■□□ 2.52
CPSF1-214ENST00000622776 TBC1D16Q8TBP0 767 aa30.78■■■□□ 2.52
CPSF1-214ENST00000622776 ECE2O60344 883 aa30.77■■■□□ 2.52
CPSF1-214ENST00000622776 HSP90B1P14625 803 aaKnown RBP30.77■■■□□ 2.52
CPSF1-214ENST00000622776 USP48Q86UV5 1035 aa30.77■■■□□ 2.52
CPSF1-214ENST00000622776 MYD88Q99836 296 aa30.77■■■□□ 2.52
CPSF1-214ENST00000622776 SEC31BQ9NQW1 1179 aa30.77■■■□□ 2.52
CPSF1-214ENST00000622776 KCNQ5Q9NR82 932 aa30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms