RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 NBPF5PQ86XG9 351 aaPredicted RBP12.77□□□□□ -0.37
VPS11-208ENST00000621676 USP26Q9BXU7 913 aa12.77□□□□□ -0.37
VPS11-208ENST00000621676 APBA3O96018 575 aa12.77□□□□□ -0.37
VPS11-208ENST00000621676 IFIT1P09914 478 aaKnown RBP12.77□□□□□ -0.37
VPS11-208ENST00000621676 CHAF1AQ13111 956 aaPredicted RBP12.77□□□□□ -0.37
VPS11-208ENST00000621676 AK7Q96M32 723 aa12.77□□□□□ -0.37
VPS11-208ENST00000621676 ESYT1Q9BSJ8 1104 aa12.77□□□□□ -0.37
VPS11-208ENST00000621676 TOMM22Q9NS69 142 aa12.77□□□□□ -0.37
VPS11-208ENST00000621676 VPS53Q5VIR6 699 aa12.76□□□□□ -0.37
VPS11-208ENST00000621676 OLFM4Q6UX06 510 aa12.76□□□□□ -0.37
VPS11-208ENST00000621676 GPATCH3Q96I76 525 aa12.76□□□□□ -0.37
VPS11-208ENST00000621676 BCL11BQ9C0K0 894 aaPredicted RBP12.76□□□□□ -0.37
VPS11-208ENST00000621676 MTMR7Q9Y216 660 aa12.76□□□□□ -0.37
VPS11-208ENST00000621676 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.76□□□□□ -0.37
VPS11-208ENST00000621676 TTC39AQ5SRH9 613 aa12.76□□□□□ -0.37
VPS11-208ENST00000621676 CCDC191Q8NCU4 936 aa12.76□□□□□ -0.37
VPS11-208ENST00000621676 H7C1W4 665 aa12.75□□□□□ -0.37
VPS11-208ENST00000621676 ADCK5Q3MIX3 580 aa12.75□□□□□ -0.37
VPS11-208ENST00000621676 HSP90AB4PQ58FF6 505 aa12.75□□□□□ -0.37
VPS11-208ENST00000621676 TTLL5Q6EMB2 1281 aa12.75□□□□□ -0.37
VPS11-208ENST00000621676 NECAB1Q8N987 351 aa12.75□□□□□ -0.37
VPS11-208ENST00000621676 TTLL11Q8NHH1 800 aa12.75□□□□□ -0.37
VPS11-208ENST00000621676 ARHGEF1Q92888 912 aaKnown RBP12.75□□□□□ -0.37
VPS11-208ENST00000621676 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.75□□□□□ -0.37
VPS11-208ENST00000621676 JCADQ9P266 1359 aa12.75□□□□□ -0.37
VPS11-208ENST00000621676 GLRX3O76003 335 aaKnown RBP12.75□□□□□ -0.37
VPS11-208ENST00000621676 BCAMP50895 628 aa12.75□□□□□ -0.37
VPS11-208ENST00000621676 RTCBQ9Y3I0 505 aaKnown RBP12.75□□□□□ -0.37
VPS11-208ENST00000621676 ALS2Q96Q42 1657 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 RAB11FIP3O75154 756 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 REC8O95072 547 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 ZAP70P43403 619 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 VPS37DQ86XT2 251 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 XAGE2Q96GT9 111 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 KIF2CQ99661 725 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 INCENPQ9NQS7 918 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 ANKRD18BA2A2Z9 1011 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 EYA2O00167 538 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 CASTP20810 708 aaKnown RBP12.74□□□□□ -0.37
VPS11-208ENST00000621676 GYG1P46976 350 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 MIGA1Q8NAN2 632 aa12.74□□□□□ -0.37
VPS11-208ENST00000621676 JAKMIP1Q96N16 626 aaKnown RBP12.74□□□□□ -0.37
VPS11-208ENST00000621676 PDGFDQ9GZP0 370 aaPredicted RBP12.74□□□□□ -0.37
VPS11-208ENST00000621676 VPS72Q15906 364 aa12.73□□□□□ -0.37
VPS11-208ENST00000621676 ATG9AQ7Z3C6 839 aa12.73□□□□□ -0.37
VPS11-208ENST00000621676 SETDB2Q96T68 719 aa12.73□□□□□ -0.37
VPS11-208ENST00000621676 UTP14AQ9BVJ6 771 aaKnown RBP12.73□□□□□ -0.37
VPS11-208ENST00000621676 PHKA1P46020 1223 aa12.73□□□□□ -0.37
VPS11-208ENST00000621676 ZBTB38Q8NAP3 1195 aaPredicted RBP12.73□□□□□ -0.37
VPS11-208ENST00000621676 TEX13AQ9BXU3 409 aaPredicted RBP12.73□□□□□ -0.37
VPS11-208ENST00000621676 GDPD2Q9HCC8 539 aa12.73□□□□□ -0.37
VPS11-208ENST00000621676 TRPC5Q9UL62 973 aaPredicted RBP12.73□□□□□ -0.37
VPS11-208ENST00000621676 RFX5P48382 616 aaPredicted RBP12.73□□□□□ -0.37
VPS11-208ENST00000621676 DEFB132Q7Z7B7 95 aa12.73□□□□□ -0.37
VPS11-208ENST00000621676 EIF5P55010 431 aaKnown RBP12.72□□□□□ -0.37
VPS11-208ENST00000621676 KRT27Q7Z3Y8 459 aa12.72□□□□□ -0.37
VPS11-208ENST00000621676 CELF1Q92879 486 aaKnown RBP12.72□□□□□ -0.37
VPS11-208ENST00000621676 KIF1AQ12756 1690 aa12.72□□□□□ -0.37
VPS11-208ENST00000621676 ATP2B3Q16720 1220 aa12.72□□□□□ -0.37
VPS11-208ENST00000621676 SH3TC1Q8TE82 1336 aa12.72□□□□□ -0.37
VPS11-208ENST00000621676 BCL9O00512 1426 aa12.72□□□□□ -0.37
VPS11-208ENST00000621676 KLRK1P26718 216 aa12.72□□□□□ -0.37
VPS11-208ENST00000621676 CTSWP56202 376 aa12.72□□□□□ -0.37
VPS11-208ENST00000621676 CASP7P55210 303 aa12.71□□□□□ -0.37
VPS11-208ENST00000621676 NCAPD2Q15021 1401 aa12.71□□□□□ -0.37
VPS11-208ENST00000621676 SSFA2P28290 1259 aa12.71□□□□□ -0.38
VPS11-208ENST00000621676 RRP12Q5JTH9 1297 aaKnown RBP12.71□□□□□ -0.38
VPS11-208ENST00000621676 ISCA1Q9BUE6 129 aa12.71□□□□□ -0.38
VPS11-208ENST00000621676 EN1Q05925 392 aaPredicted RBP12.7□□□□□ -0.38
VPS11-208ENST00000621676 TRAPPC3LQ5T215 181 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 ERC1Q8IUD2 1116 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 CCDC82Q8N4S0 544 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 BCL9LQ86UU0 1499 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 CAMTA2O94983 1202 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 IL6STP40189 918 aaPredicted RBP12.7□□□□□ -0.38
VPS11-208ENST00000621676 CCDC158Q5M9N0 1113 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 ANKIB1Q9P2G1 1089 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 NSFL1CQ9UNZ2 370 aaKnown RBP12.7□□□□□ -0.38
VPS11-208ENST00000621676 HDAC5Q9UQL6 1122 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 F8W031 263 aaPredicted RBP12.7□□□□□ -0.38
VPS11-208ENST00000621676 SMIM22K7EJ46 135 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 RIMBP2O15034 1052 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 DENND2AQ9ULE3 1009 aa12.7□□□□□ -0.38
VPS11-208ENST00000621676 HSP90B1P14625 803 aaKnown RBP12.69□□□□□ -0.38
VPS11-208ENST00000621676 RXRAP19793 462 aa12.69□□□□□ -0.38
VPS11-208ENST00000621676 FERMT3Q86UX7 667 aa12.69□□□□□ -0.38
VPS11-208ENST00000621676 FNBP4Q8N3X1 1017 aaPredicted RBP12.69□□□□□ -0.38
VPS11-208ENST00000621676 GPHNQ9NQX3 736 aaPredicted RBP12.69□□□□□ -0.38
VPS11-208ENST00000621676 PHRF1Q9P1Y6 1649 aaKnown RBP12.69□□□□□ -0.38
VPS11-208ENST00000621676 DDX11Q96FC9 970 aa12.69□□□□□ -0.38
VPS11-208ENST00000621676 RBM8AQ9Y5S9 174 aaKnown RBP12.69□□□□□ -0.38
VPS11-208ENST00000621676 CCDC144CPQ8IYA2 1237 aa12.68□□□□□ -0.38
VPS11-208ENST00000621676 COPRSQ9NQ92 184 aa12.68□□□□□ -0.38
VPS11-208ENST00000621676 PAG1Q9NWQ8 432 aa12.68□□□□□ -0.38
VPS11-208ENST00000621676 PCCAP05165 728 aaPredicted RBP12.68□□□□□ -0.38
VPS11-208ENST00000621676 MCCP23508 829 aa12.68□□□□□ -0.38
VPS11-208ENST00000621676 IGHMBP2P38935 993 aaKnown RBP12.68□□□□□ -0.38
VPS11-208ENST00000621676 SLC9C2Q5TAH2 1124 aa12.68□□□□□ -0.38
VPS11-208ENST00000621676 CCDC83Q8IWF9 413 aa12.68□□□□□ -0.38
VPS11-208ENST00000621676 RTN4Q9NQC3 1192 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms