RNA–Protein interactions for RNA: ENST00000616614.4

FMR1-216, Transcript of fragile X mental retardation 1, human

TSL 5

Gene FMR1, Length 1,409 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FMR1-216	ENST00000616614	RCAN3	Q9UKA8	241 aa		40.26	■■■■■ 4.04
FMR1-216	ENST00000616614	ARFGEF1	Q9Y6D6	1849 aa		40.26	■■■■■ 4.04
FMR1-216	ENST00000616614	CTSW	P56202	376 aa		40.25	■■■■■ 4.03
FMR1-216	ENST00000616614	ZKSCAN2	Q63HK3	967 aa		40.25	■■■■■ 4.03
FMR1-216	ENST00000616614	DDX46	Q7L014	1031 aa	Known RBP	40.25	■■■■■ 4.03
FMR1-216	ENST00000616614	TTLL11	Q8NHH1	800 aa		40.25	■■■■■ 4.03
FMR1-216	ENST00000616614	UTY	O14607	1347 aa		40.25	■■■■■ 4.03
FMR1-216	ENST00000616614	CCT4	P50991	539 aa	Known RBP	40.25	■■■■■ 4.03
FMR1-216	ENST00000616614	USP44	Q9H0E7	712 aa		40.25	■■■■■ 4.03
FMR1-216	ENST00000616614	COL4A1	P02462	1669 aa		40.24	■■■■■ 4.03
FMR1-216	ENST00000616614	CLUAP1	Q96AJ1	413 aa		40.24	■■■■■ 4.03
FMR1-216	ENST00000616614	SEC31B	Q9NQW1	1179 aa		40.24	■■■■■ 4.03
FMR1-216	ENST00000616614	EPHA10	Q5JZY3	1008 aa		40.23	■■■■■ 4.03
FMR1-216	ENST00000616614	CELF1	Q92879	486 aa	Known RBP	40.23	■■■■■ 4.03
FMR1-216	ENST00000616614	FOXO4	P98177	505 aa		40.22	■■■■■ 4.03
FMR1-216	ENST00000616614	GRAP	Q13588	217 aa		40.22	■■■■■ 4.03
FMR1-216	ENST00000616614	GRAPL	Q8TC17	118 aa	Predicted RBP	40.22	■■■■■ 4.03
FMR1-216	ENST00000616614	CCDC152	Q4G0S7	254 aa		40.21	■■■■■ 4.03
FMR1-216	ENST00000616614	INTS3	Q68E01	1043 aa	Known RBP	40.21	■■■■■ 4.03
FMR1-216	ENST00000616614	KAZALD1	Q96I82	304 aa		40.21	■■■■■ 4.03
FMR1-216	ENST00000616614	PPEF1	O14829	653 aa	Predicted RBP	40.2	■■■■■ 4.03
FMR1-216	ENST00000616614	CACNA1S	Q13698	1873 aa		40.19	■■■■■ 4.02
FMR1-216	ENST00000616614	NFKBIE	O00221	500 aa		40.19	■■■■■ 4.02
FMR1-216	ENST00000616614	CSF1R	P07333	972 aa		40.19	■■■■■ 4.02
FMR1-216	ENST00000616614	SUCLG2	Q96I99	432 aa		40.19	■■■■■ 4.02
FMR1-216	ENST00000616614	GREM2	Q9H772	168 aa		40.19	■■■■■ 4.02
FMR1-216	ENST00000616614	BBOX1	O75936	387 aa		40.18	■■■■■ 4.02
FMR1-216	ENST00000616614	RASSF7	Q02833	373 aa		40.17	■■■■■ 4.02
FMR1-216	ENST00000616614	PRELP	P51888	382 aa		40.16	■■■■■ 4.02
FMR1-216	ENST00000616614	TAF1	P21675	1872 aa		40.15	■■■■■ 4.02
FMR1-216	ENST00000616614	ATP6V0A2	Q9Y487	856 aa		40.15	■■■■■ 4.02
FMR1-216	ENST00000616614	SNED1	Q8TER0	1413 aa		40.14	■■■■■ 4.02
FMR1-216	ENST00000616614	RLBP1	P12271	317 aa		40.14	■■■■■ 4.02
FMR1-216	ENST00000616614	CCDC93	Q567U6	631 aa		40.14	■■■■■ 4.02
FMR1-216	ENST00000616614	TMEM57	Q8N5G2	664 aa		40.14	■■■■■ 4.02
FMR1-216	ENST00000616614	RPS8	P62241	208 aa	Known RBP	40.13	■■■■■ 4.01
FMR1-216	ENST00000616614	FAM161A	Q3B820	660 aa		40.13	■■■■■ 4.01
FMR1-216	ENST00000616614	SOGA3	Q5TF21	947 aa		40.13	■■■■■ 4.01
FMR1-216	ENST00000616614	RTL9	Q8NET4	1388 aa		40.12	■■■■■ 4.01
FMR1-216	ENST00000616614	LMBR1L	Q6UX01	489 aa		40.11	■■■■■ 4.01
FMR1-216	ENST00000616614	PLIN1	O60240	522 aa		40.1	■■■■■ 4.01
FMR1-216	ENST00000616614	SP8	Q8IXZ3	490 aa		40.1	■■■■■ 4.01
FMR1-216	ENST00000616614	MEIS3	Q99687	375 aa		40.1	■■■■■ 4.01
FMR1-216	ENST00000616614	DZIP1L	Q8IYY4	767 aa	Known RBP	40.09	■■■■■ 4.01
FMR1-216	ENST00000616614	BICC1	Q9H694	974 aa	Known RBP	40.08	■■■■■ 4.01
FMR1-216	ENST00000616614	ITGA6	P23229	1130 aa		40.08	■■■■■ 4.01
FMR1-216	ENST00000616614	CC2D2B	Q6DHV5	1058 aa		40.08	■■■■■ 4.01
FMR1-216	ENST00000616614	RTKN2	Q8IZC4	609 aa		40.07	■■■■■ 4
FMR1-216	ENST00000616614	ANKRD44	Q8N8A2	993 aa		40.07	■■■■■ 4
FMR1-216	ENST00000616614	TAOK3	Q9H2K8	898 aa		40.06	■■■■■ 4
FMR1-216	ENST00000616614	LTBP3	Q9NS15	1303 aa		40.05	■■■■■ 4
FMR1-216	ENST00000616614	RABL6	Q3YEC7	729 aa	Predicted RBP	40.05	■■■■■ 4
FMR1-216	ENST00000616614	TMC4	Q7Z404	712 aa		40.05	■■■■■ 4
FMR1-216	ENST00000616614	ANKRD18A	Q8IVF6	992 aa		40.05	■■■■■ 4
FMR1-216	ENST00000616614	FTSJ3	Q8IY81	847 aa	Known RBP	40.05	■■■■■ 4
FMR1-216	ENST00000616614	PANK1	Q8TE04	598 aa		40.05	■■■■■ 4
FMR1-216	ENST00000616614	MYH3	P11055	1940 aa		40.04	■■■■■ 4
FMR1-216	ENST00000616614	FER1L6	Q2WGJ9	1857 aa		40.04	■■■■■ 4
FMR1-216	ENST00000616614	UBTFL1	P0CB47	393 aa	Predicted RBP	40.04	■■■■■ 4
FMR1-216	ENST00000616614	C9orf131	Q5VYM1	1079 aa		40.04	■■■■■ 4
FMR1-216	ENST00000616614	CDC5L	Q99459	802 aa	Known RBP	40.04	■■■■■ 4
FMR1-216	ENST00000616614	CHMP3	Q9Y3E7	222 aa		40.04	■■■■■ 4
FMR1-216	ENST00000616614	FKBP4	Q02790	459 aa	Known RBP eCLIP	40.03	■■■■■ 4
FMR1-216	ENST00000616614	LMNB1	P20700	586 aa		40	■■■■□ 3.99
FMR1-216	ENST00000616614	ANKRD18B	A2A2Z9	1011 aa		39.99	■■■■□ 3.99
FMR1-216	ENST00000616614	IFIT5	Q13325	482 aa	Known RBP	39.99	■■■■□ 3.99
FMR1-216	ENST00000616614	PSMD1	Q99460	953 aa		39.99	■■■■□ 3.99
FMR1-216	ENST00000616614	ZNF277	Q9NRM2	450 aa	Predicted RBP	39.99	■■■■□ 3.99
FMR1-216	ENST00000616614	RNF181	Q9P0P0	153 aa		39.99	■■■■□ 3.99
FMR1-216	ENST00000616614	TMX4	Q9H1E5	349 aa	Predicted RBP	39.99	■■■■□ 3.99
FMR1-216	ENST00000616614	LRRFIP2	Q9Y608	721 aa	Known RBP	39.99	■■■■□ 3.99
FMR1-216	ENST00000616614	YY1	P25490	414 aa		39.98	■■■■□ 3.99
FMR1-216	ENST00000616614	GPSM2	P81274	684 aa		39.98	■■■■□ 3.99
FMR1-216	ENST00000616614	GRIPAP1	Q4V328	841 aa		39.98	■■■■□ 3.99
FMR1-216	ENST00000616614	BSDC1	Q9NW68	430 aa	Predicted RBP	39.98	■■■■□ 3.99
FMR1-216	ENST00000616614	ITPRIP	Q8IWB1	547 aa		39.97	■■■■□ 3.99
FMR1-216	ENST00000616614	MPND	Q8N594	471 aa		39.97	■■■■□ 3.99
FMR1-216	ENST00000616614	ZNF594	Q96JF6	807 aa	Predicted RBP	39.97	■■■■□ 3.99
FMR1-216	ENST00000616614	CHD4	Q14839	1912 aa		39.96	■■■■□ 3.99
FMR1-216	ENST00000616614	CCDC57	Q2TAC2	916 aa		39.96	■■■■□ 3.99
FMR1-216	ENST00000616614	LRRC37A	A6NMS7	1700 aa		39.96	■■■■□ 3.99
FMR1-216	ENST00000616614	GNAI3	P08754	354 aa		39.95	■■■■□ 3.99
FMR1-216	ENST00000616614	C20orf194	Q5TEA3	1177 aa		39.95	■■■■□ 3.99
FMR1-216	ENST00000616614	DPP8	Q6V1X1	898 aa	Predicted RBP	39.95	■■■■□ 3.99
FMR1-216	ENST00000616614	RTFDC1	Q9BY42	306 aa	Predicted RBP	39.95	■■■■□ 3.99
FMR1-216	ENST00000616614	NSFL1C	Q9UNZ2	370 aa	Known RBP	39.95	■■■■□ 3.99
FMR1-216	ENST00000616614	IGHMBP2	P38935	993 aa	Known RBP	39.94	■■■■□ 3.98
FMR1-216	ENST00000616614	ZBTB7B	O15156	539 aa	Predicted RBP	39.93	■■■■□ 3.98
FMR1-216	ENST00000616614	MINPP1	Q9UNW1	487 aa		39.93	■■■■□ 3.98
FMR1-216	ENST00000616614	SBF1	O95248	1867 aa		39.93	■■■■□ 3.98
FMR1-216	ENST00000616614	DUOX1	Q9NRD9	1551 aa		39.91	■■■■□ 3.98
FMR1-216	ENST00000616614	MS4A1	P11836	297 aa		39.91	■■■■□ 3.98
FMR1-216	ENST00000616614	MPHOSPH8	Q99549	860 aa		39.91	■■■■□ 3.98
FMR1-216	ENST00000616614	POLL	Q9UGP5	575 aa		39.91	■■■■□ 3.98
FMR1-216	ENST00000616614	IARS	P41252	1262 aa	Known RBP	39.9	■■■■□ 3.98
FMR1-216	ENST00000616614	PODXL2	Q9NZ53	605 aa		39.9	■■■■□ 3.98
FMR1-216	ENST00000616614	WTIP	A6NIX2	430 aa	Predicted RBP	39.89	■■■■□ 3.98
FMR1-216	ENST00000616614	COG6	Q9Y2V7	657 aa		39.89	■■■■□ 3.98
FMR1-216	ENST00000616614	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	39.88	■■■■□ 3.97
FMR1-216	ENST00000616614	KLHDC4	Q8TBB5	520 aa		39.88	■■■■□ 3.97

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms