RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TSPY2A6NKD2 308 aa16.15■□□□□ 0.18
CPSF1-212ENST00000616140 PPP1R12BO60237 982 aaPredicted RBP16.15■□□□□ 0.18
CPSF1-212ENST00000616140 MRPS27Q92552 414 aaKnown RBP16.15■□□□□ 0.18
CPSF1-212ENST00000616140 NPHP3Q7Z494 1330 aa16.15■□□□□ 0.18
CPSF1-212ENST00000616140 ZBTB43O43298 467 aa16.15■□□□□ 0.18
CPSF1-212ENST00000616140 ZFYP08048 801 aaPredicted RBP16.15■□□□□ 0.18
CPSF1-212ENST00000616140 ATP2B3Q16720 1220 aa16.15■□□□□ 0.18
CPSF1-212ENST00000616140 ALG1Q9BT22 464 aa16.15■□□□□ 0.18
CPSF1-212ENST00000616140 MTIF2P46199 727 aaKnown RBP16.15■□□□□ 0.18
CPSF1-212ENST00000616140 LRRC59Q96AG4 307 aaKnown RBP16.15■□□□□ 0.18
CPSF1-212ENST00000616140 AKAP4Q5JQC9 854 aa16.14■□□□□ 0.17
CPSF1-212ENST00000616140 KCNG4Q8TDN1 519 aa16.14■□□□□ 0.17
CPSF1-212ENST00000616140 PAFAH1B1P43034 410 aa16.14■□□□□ 0.17
CPSF1-212ENST00000616140 UBASH3AP57075 661 aa16.14■□□□□ 0.17
CPSF1-212ENST00000616140 MAP9Q49MG5 647 aa16.14■□□□□ 0.17
CPSF1-212ENST00000616140 TCP11L1Q9NUJ3 509 aa16.14■□□□□ 0.17
CPSF1-212ENST00000616140 G2E3Q7L622 706 aa16.14■□□□□ 0.17
CPSF1-212ENST00000616140 INTS4Q96HW7 963 aaKnown RBP16.14■□□□□ 0.17
CPSF1-212ENST00000616140 KDM2BQ8NHM5 1336 aa16.14■□□□□ 0.17
CPSF1-212ENST00000616140 MARCKSP29966 332 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-212ENST00000616140 SEPT7Q16181 437 aaKnown RBP16.13■□□□□ 0.17
CPSF1-212ENST00000616140 CCDC96Q2M329 555 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 CDC5LQ99459 802 aaKnown RBP16.13■□□□□ 0.17
CPSF1-212ENST00000616140 FLT4P35916 1363 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 TNRQ92752 1358 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 N4BP3O15049 544 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 IL15P40933 162 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-212ENST00000616140 TTC41PQ6P2S7 1318 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 USO1O60763 962 aaKnown RBP16.13■□□□□ 0.17
CPSF1-212ENST00000616140 CPA1P15085 419 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 TMEM266Q2M3C6 531 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 CCDC150Q8NCX0 1101 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 TSG101Q99816 390 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 TMOD2Q9NZR1 351 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 IQSEC3Q9UPP2 1182 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-212ENST00000616140 SYT1P21579 422 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 TYRO3Q06418 890 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 PAXBP1Q9Y5B6 917 aa16.13■□□□□ 0.17
CPSF1-212ENST00000616140 PZPP20742 1482 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 COL17A1Q9UMD9 1497 aaPredicted RBP16.12■□□□□ 0.17
CPSF1-212ENST00000616140 NPATQ14207 1427 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 WTAPQ15007 396 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 CHST3Q7LGC8 479 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 LUZP1Q86V48 1076 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 VAT1LQ9HCJ6 419 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 STX8Q9UNK0 236 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 ARHGEF12Q9NZN5 1544 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 KIF5BP33176 963 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 SLC4A8Q2Y0W8 1093 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 SLC9C2Q5TAH2 1124 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 CREB3L3Q68CJ9 461 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 KANK3Q6NY19 840 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 CCDC12Q8WUD4 166 aaPredicted RBP16.12■□□□□ 0.17
CPSF1-212ENST00000616140 RNF123Q5XPI4 1314 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 GOLGA6L9A6NEM1 432 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 AOPEPQ8N6M6 819 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 MAP3K19Q56UN5 1328 aa16.12■□□□□ 0.17
CPSF1-212ENST00000616140 UQCRFS1P1P0C7P4 283 aa16.11■□□□□ 0.17
CPSF1-212ENST00000616140 LMOD1P29536 600 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-212ENST00000616140 FGFR1OPO95684 399 aaKnown RBP16.11■□□□□ 0.17
CPSF1-212ENST00000616140 MAPK8IP2Q13387 824 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-212ENST00000616140 VPS36Q86VN1 386 aa16.11■□□□□ 0.17
CPSF1-212ENST00000616140 UHRF1BP1LA0JNW5 1464 aa16.11■□□□□ 0.17
CPSF1-212ENST00000616140 SSR1P43307 286 aaKnown RBP16.11■□□□□ 0.17
CPSF1-212ENST00000616140 DHX37Q8IY37 1157 aaKnown RBP16.11■□□□□ 0.17
CPSF1-212ENST00000616140 NFATC2IPQ8NCF5 419 aa16.11■□□□□ 0.17
CPSF1-212ENST00000616140 GOLGA6L7A0A1B0GV03 622 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 AFMP43652 599 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 PDE4BQ07343 736 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 TRERF1Q96PN7 1200 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 DNAI1Q9UI46 699 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 ANKRD62A6NC57 917 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 CADPS2Q86UW7 1296 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 PAG1Q9NWQ8 432 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 TRIM35Q9UPQ4 493 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 CCDC171Q6TFL3 1326 aa16.1■□□□□ 0.17
CPSF1-212ENST00000616140 PRC1O43663 620 aa16.09■□□□□ 0.17
CPSF1-212ENST00000616140 NPC1L1Q9UHC9 1359 aa16.09■□□□□ 0.17
CPSF1-212ENST00000616140 C6orf229H3BNL8 230 aa16.09■□□□□ 0.17
CPSF1-212ENST00000616140 KAT14Q9H8E8 782 aa16.09■□□□□ 0.17
CPSF1-212ENST00000616140 SPTLC2O15270 562 aa16.09■□□□□ 0.17
CPSF1-212ENST00000616140 NBPF7P0C2Y1 421 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-212ENST00000616140 GTF2F1P35269 517 aaKnown RBP eCLIP16.09■□□□□ 0.172e-7■■■■■ 67.6
CPSF1-212ENST00000616140 WWC2Q6AWC2 1192 aa16.09■□□□□ 0.17
CPSF1-212ENST00000616140 TCERG1LQ5VWI1 586 aa16.08■□□□□ 0.17
CPSF1-212ENST00000616140 ZCRB1Q8TBF4 217 aaKnown RBP16.08■□□□□ 0.17
CPSF1-212ENST00000616140 CALML4Q96GE6 196 aa16.08■□□□□ 0.17
CPSF1-212ENST00000616140 RIMS2Q9UQ26 1411 aa16.08■□□□□ 0.17
CPSF1-212ENST00000616140 MSH6P52701 1360 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 APOBRQ0VD83 1088 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 BMS1Q14692 1282 aaKnown RBP16.08■□□□□ 0.16
CPSF1-212ENST00000616140 RTN1Q16799 776 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 RNF216Q9NWF9 866 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-212ENST00000616140 ZHX1Q9UKY1 873 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-212ENST00000616140 KIF20AO95235 890 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 TRIM47Q96LD4 638 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 ASXL2Q76L83 1435 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 LDHCP07864 332 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 CYP7A1P22680 504 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 MCM3P25205 808 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 298.2 ms