RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TBC1D9Q6ZT07 1266 aa11.99□□□□□ -0.49
VPS39-214ENST00000614932 ARHGAP45Q92619 1136 aa11.99□□□□□ -0.49
VPS39-214ENST00000614932 DDX17Q92841 729 aaKnown RBP11.99□□□□□ -0.49
VPS39-214ENST00000614932 FOXD4L5Q5VV16 416 aaPredicted RBP11.99□□□□□ -0.49
VPS39-214ENST00000614932 REXO1L1PQ8IX06 675 aa11.99□□□□□ -0.49
VPS39-214ENST00000614932 FOXD4L4Q8WXT5 416 aaPredicted RBP11.99□□□□□ -0.49
VPS39-214ENST00000614932 KIF2AO00139 706 aaPredicted RBP11.98□□□□□ -0.49
VPS39-214ENST00000614932 CORO7P57737 925 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 CCDC186Q7Z3E2 898 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 MRVI1Q9Y6F6 885 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 PIK3R4Q99570 1358 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 NPHP1O15259 732 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 ATP8B1O43520 1251 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 OAS2P29728 719 aaKnown RBP11.98□□□□□ -0.49
VPS39-214ENST00000614932 LRMPQ12912 555 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 TMCO3Q6UWJ1 677 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 LEKR1Q6ZMV7 388 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 IL17REQ8NFR9 667 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 OTUD7AQ8TE49 926 aaPredicted RBP11.98□□□□□ -0.49
VPS39-214ENST00000614932 ARGLU1Q9NWB6 273 aaPredicted RBP11.98□□□□□ -0.49
VPS39-214ENST00000614932 CCDC171Q6TFL3 1326 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 IGSF1Q8N6C5 1336 aa11.98□□□□□ -0.49
VPS39-214ENST00000614932 MX1P20591 662 aa11.97□□□□□ -0.49
VPS39-214ENST00000614932 DNAAF4Q8WXU2 420 aa11.97□□□□□ -0.49
VPS39-214ENST00000614932 ZSCAN16Q9H4T2 348 aaPredicted RBP11.97□□□□□ -0.49
VPS39-214ENST00000614932 MSH6P52701 1360 aa11.97□□□□□ -0.49
VPS39-214ENST00000614932 CRB1P82279 1406 aa11.97□□□□□ -0.49
VPS39-214ENST00000614932 PIK3C2AO00443 1686 aa11.97□□□□□ -0.49
VPS39-214ENST00000614932 GNAT3A8MTJ3 354 aa11.97□□□□□ -0.49
VPS39-214ENST00000614932 GADD45BO75293 160 aaPredicted RBP11.97□□□□□ -0.49
VPS39-214ENST00000614932 BRD1O95696 1058 aa11.97□□□□□ -0.49
VPS39-214ENST00000614932 EIF2S2P20042 333 aaKnown RBP11.97□□□□□ -0.49
VPS39-214ENST00000614932 LMAN1P49257 510 aa11.97□□□□□ -0.49
VPS39-214ENST00000614932 ARHGEF10O15013 1369 aa11.97□□□□□ -0.49
VPS39-214ENST00000614932 ST18O60284 1047 aa11.96□□□□□ -0.49
VPS39-214ENST00000614932 TPM1P09493 284 aa11.96□□□□□ -0.49
VPS39-214ENST00000614932 ARID4AP29374 1257 aaPredicted RBP11.96□□□□□ -0.49
VPS39-214ENST00000614932 PTPN14Q15678 1187 aa11.96□□□□□ -0.49
VPS39-214ENST00000614932 TACO1Q9BSH4 297 aaKnown RBP11.96□□□□□ -0.49
VPS39-214ENST00000614932 ZCCHC17Q9NP64 241 aaKnown RBP11.96□□□□□ -0.49
VPS39-214ENST00000614932 SMC2O95347 1197 aa11.96□□□□□ -0.49
VPS39-214ENST00000614932 HMGB1P09429 215 aaKnown RBP11.96□□□□□ -0.49
VPS39-214ENST00000614932 ZRSR1Q15695 479 aaKnown RBP11.96□□□□□ -0.49
VPS39-214ENST00000614932 ERCC6LQ2NKX8 1250 aa11.96□□□□□ -0.49
VPS39-214ENST00000614932 ZSCAN25Q6NSZ9 544 aa11.96□□□□□ -0.49
VPS39-214ENST00000614932 LGR6Q9HBX8 967 aa11.96□□□□□ -0.49
VPS39-214ENST00000614932 SCP2P22307 547 aa11.96□□□□□ -0.5
VPS39-214ENST00000614932 NBPF3Q9H094 633 aa11.96□□□□□ -0.5
VPS39-214ENST00000614932 ANXA1P04083 346 aa11.95□□□□□ -0.5
VPS39-214ENST00000614932 PROSER2Q86WR7 435 aaPredicted RBP11.95□□□□□ -0.5
VPS39-214ENST00000614932 PSMD1Q99460 953 aa11.95□□□□□ -0.5
VPS39-214ENST00000614932 KCNQ3O43525 872 aa11.95□□□□□ -0.5
VPS39-214ENST00000614932 ZC3H6P61129 1189 aaKnown RBP11.95□□□□□ -0.5
VPS39-214ENST00000614932 ZC3H12AQ5D1E8 599 aaKnown RBP11.95□□□□□ -0.5
VPS39-214ENST00000614932 NYAP1Q6ZVC0 841 aa11.95□□□□□ -0.5
VPS39-214ENST00000614932 FILIP1Q7Z7B0 1213 aa11.95□□□□□ -0.5
VPS39-214ENST00000614932 EFCAB13Q8IY85 973 aa11.95□□□□□ -0.5
VPS39-214ENST00000614932 FAM210AQ96ND0 272 aa11.95□□□□□ -0.5
VPS39-214ENST00000614932 FUCA2Q9BTY2 467 aa11.95□□□□□ -0.5
VPS39-214ENST00000614932 ADAM21Q9UKJ8 722 aa11.95□□□□□ -0.5
VPS39-214ENST00000614932 MNAT1P51948 309 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 INHBEP58166 350 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 MPRIPQ6WCQ1 1025 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 USP48Q86UV5 1035 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 USP26Q9BXU7 913 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 C21orf2O43822 256 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 RPS6KA5O75582 802 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 IRX1P78414 480 aaPredicted RBP11.94□□□□□ -0.5
VPS39-214ENST00000614932 SMC1AQ14683 1233 aaKnown RBP11.94□□□□□ -0.5
VPS39-214ENST00000614932 TSHZ3Q63HK5 1081 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 DRC7Q8IY82 874 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 GCC1Q96CN9 775 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 STK31Q9BXU1 1019 aa11.94□□□□□ -0.5
VPS39-214ENST00000614932 ELP1O95163 1332 aa11.93□□□□□ -0.5
VPS39-214ENST00000614932 INTS3Q68E01 1043 aaKnown RBP11.93□□□□□ -0.5
VPS39-214ENST00000614932 XRN1Q8IZH2 1706 aaKnown RBP11.93□□□□□ -0.5
VPS39-214ENST00000614932 RGS12O14924 1447 aa11.93□□□□□ -0.5
VPS39-214ENST00000614932 ANKRD33BA6NCL7 494 aa11.93□□□□□ -0.5
VPS39-214ENST00000614932 USP8P40818 1118 aa11.93□□□□□ -0.5
VPS39-214ENST00000614932 ARHGAP29Q52LW3 1261 aa11.93□□□□□ -0.5
VPS39-214ENST00000614932 CEP85Q6P2H3 762 aa11.93□□□□□ -0.5
VPS39-214ENST00000614932 ZNF513Q8N8E2 541 aaPredicted RBP11.93□□□□□ -0.5
VPS39-214ENST00000614932 MIEF2Q96C03 454 aa11.93□□□□□ -0.5
VPS39-214ENST00000614932 FAXDC2Q96IV6 333 aa11.93□□□□□ -0.5
VPS39-214ENST00000614932 PHAXQ9H814 394 aaKnown RBP11.93□□□□□ -0.5
VPS39-214ENST00000614932 NALCNQ8IZF0 1738 aa11.93□□□□□ -0.5
VPS39-214ENST00000614932 CDC45O75419 566 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 PDRG1Q9NUG6 133 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 KDRP35968 1356 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 TTLL5Q6EMB2 1281 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 TADA2BQ86TJ2 420 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 MKRN1Q9UHC7 482 aaKnown RBP11.92□□□□□ -0.5
VPS39-214ENST00000614932 CTAGE5O15320 804 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 GCP02774 474 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 GSPT1P15170 499 aaKnown RBP11.92□□□□□ -0.5
VPS39-214ENST00000614932 ERCC3P19447 782 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 CASTP20810 708 aaKnown RBP11.92□□□□□ -0.5
VPS39-214ENST00000614932 FLIIQ13045 1269 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 TTC19Q6DKK2 380 aaPredicted RBP11.92□□□□□ -0.5
VPS39-214ENST00000614932 GIMAP7Q8NHV1 300 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms