RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 TSPYL2Q9H2G4 693 aaPredicted RBP5.65□□□□□ -1.5
VPS13D-213ENST00000613099 KIAA1107Q9UPP5 1409 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 CAMK4Q16566 473 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 CCHCR1Q8TD31 782 aa5.65□□□□□ -1.5
VPS13D-213ENST00000613099 LIG3P49916 1009 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 MMP14P50281 582 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 CCDC158Q5M9N0 1113 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 CDK5RAP3Q96JB5 506 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 JAKMIP1Q96N16 626 aaKnown RBP5.65□□□□□ -1.51
VPS13D-213ENST00000613099 PHLDB2Q86SQ0 1253 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 ZNF280CQ8ND82 737 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 RIPOR2Q9Y4F9 1068 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 IQGAP2Q13576 1575 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 NSD2O96028 1365 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 CCDC69A6NI79 296 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 HIP1O00291 1037 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 RNF8O76064 485 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 ME1P48163 572 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 AMOTQ4VCS5 1084 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 CCDC129Q6ZRS4 1044 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 IMPACTQ9P2X3 320 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 CTNNA3Q9UI47 895 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 FRMD4BQ9Y2L6 1034 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 RNF123Q5XPI4 1314 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 ZNF75DP51815 510 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 MIER3Q7Z3K6 550 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 USP48Q86UV5 1035 aa5.65□□□□□ -1.51
VPS13D-213ENST00000613099 NUP160Q12769 1436 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 CACNA2D4Q7Z3S7 1137 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 ZBTB9Q96C00 473 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 BMP2KLQ5H9B9 411 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 SLC30A9Q6PML9 568 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 STK38Q15208 465 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 TRIM58Q8NG06 486 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 KIAA1524Q8TCG1 905 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 SPECC1Q5M775 1068 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 ACBD5Q5T8D3 534 aaPredicted RBP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 CCAR1Q8IX12 1150 aaKnown RBP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 RAB3IPQ96QF0 476 aaPredicted RBP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 TYRO3Q06418 890 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 MAATS1Q7Z4T9 603 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 C17orf53Q8N3J3 647 aaPredicted RBP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 SHANK2Q9UPX8 1470 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 SETD1BQ9UPS6 1966 aaKnown RBP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 SEPT2Q15019 361 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 ZRANB2O95218 330 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 NBPF10Q6P3W6 841 aaKnown RBP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 YEATS4O95619 227 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 FAM43BQ6ZT52 329 aaPredicted RBP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 ALS2CR12Q96Q35 445 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 GOLGA6BA6NDN3 693 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 GMNNO75496 209 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 SYT1P21579 422 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 MVPQ14764 893 aaKnown RBP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 CCDC155Q8N6L0 562 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 OSBPL9Q96SU4 736 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 ARHGAP18Q8N392 663 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 PHACTR2O75167 634 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 VAV2P52735 878 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 PNMA8AQ86V59 439 aaPredicted RBP5.64□□□□□ -1.51
VPS13D-213ENST00000613099 SRCIN1Q9C0H9 1055 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 MIS12Q9H081 205 aa5.64□□□□□ -1.51
VPS13D-213ENST00000613099 LZICQ8WZA0 190 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 INTS4Q96HW7 963 aaKnown RBP5.63□□□□□ -1.51
VPS13D-213ENST00000613099 ETAA1Q9NY74 926 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 RABGAP1Q9Y3P9 1069 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 PCF11O94913 1555 aaKnown RBP5.63□□□□□ -1.51
VPS13D-213ENST00000613099 CCDC160A6NGH7 325 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 RASSF10A6NK89 507 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 PNMA6AP0CW24 399 aaPredicted RBP5.63□□□□□ -1.51
VPS13D-213ENST00000613099 TARBP1Q13395 1621 aaKnown RBP5.63□□□□□ -1.51
VPS13D-213ENST00000613099 USO1O60763 962 aaKnown RBP5.63□□□□□ -1.51
VPS13D-213ENST00000613099 STIM1Q13586 685 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 ZNF215Q9UL58 517 aaPredicted RBP5.63□□□□□ -1.51
VPS13D-213ENST00000613099 PHLDB3Q6NSJ2 640 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 RUNDC1Q96C34 613 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 MYO1BO43795 1136 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 GFM2Q969S9 779 aaKnown RBP5.63□□□□□ -1.51
VPS13D-213ENST00000613099 POLD1P28340 1107 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 ABCD1P33897 745 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 CCDC152Q4G0S7 254 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 TRIM35Q9UPQ4 493 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 LMOD2Q6P5Q4 547 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 STAG1Q8WVM7 1258 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 ELF1P32519 619 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 CCDC12Q8WUD4 166 aaPredicted RBP5.63□□□□□ -1.51
VPS13D-213ENST00000613099 USP47Q96K76 1375 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 TSPOAP1O95153 1857 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 ZBTB22O15209 634 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 TMC6Q7Z403 805 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 SLC24A3Q9HC58 644 aa5.63□□□□□ -1.51
VPS13D-213ENST00000613099 RRP7AQ9Y3A4 280 aaKnown RBP5.63□□□□□ -1.51
VPS13D-213ENST00000613099 SPECC1L-ADORA2AF8WAN1 911 aa5.62□□□□□ -1.51
VPS13D-213ENST00000613099 CUL3Q13618 768 aa5.62□□□□□ -1.51
VPS13D-213ENST00000613099 EGFL6Q8IUX8 553 aa5.62□□□□□ -1.51
VPS13D-213ENST00000613099 CAPS2Q9BXY5 557 aa5.62□□□□□ -1.51
VPS13D-213ENST00000613099 SFSWAPQ12872 951 aaKnown RBP5.62□□□□□ -1.51
VPS13D-213ENST00000613099 SMC1BQ8NDV3 1235 aa5.62□□□□□ -1.51
VPS13D-213ENST00000613099 SMARCC2Q8TAQ2 1214 aa5.62□□□□□ -1.51
VPS13D-213ENST00000613099 TAOK3Q9H2K8 898 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms