RNA–Protein interactions for RNA: ENST00000602905.1

PPFIA3-213, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 2

Gene PPFIA3, Length 799 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-213ENST00000602905 BBOX1O75936 387 aa20.21■□□□□ 0.83
PPFIA3-213ENST00000602905 CTSWP56202 376 aa20.21■□□□□ 0.83
PPFIA3-213ENST00000602905 GRAPQ13588 217 aa20.21■□□□□ 0.83
PPFIA3-213ENST00000602905 ZKSCAN2Q63HK3 967 aa20.21■□□□□ 0.83
PPFIA3-213ENST00000602905 CC2D2BQ6DHV5 1058 aa20.21■□□□□ 0.83
PPFIA3-213ENST00000602905 GRAPLQ8TC17 118 aaPredicted RBP20.21■□□□□ 0.83
PPFIA3-213ENST00000602905 TAF1P21675 1872 aa20.2■□□□□ 0.82
PPFIA3-213ENST00000602905 FER1L6Q2WGJ9 1857 aa20.2■□□□□ 0.82
PPFIA3-213ENST00000602905 GRIPAP1Q4V328 841 aa20.2■□□□□ 0.82
PPFIA3-213ENST00000602905 ATF7IPQ6VMQ6 1270 aa20.2■□□□□ 0.82
PPFIA3-213ENST00000602905 TMC4Q7Z404 712 aa20.2■□□□□ 0.82
PPFIA3-213ENST00000602905 PLA2G12BQ9BX93 195 aa20.2■□□□□ 0.82
PPFIA3-213ENST00000602905 CCDC88AQ3V6T2 1871 aa20.2■□□□□ 0.82
PPFIA3-213ENST00000602905 CASP7P55210 303 aa20.19■□□□□ 0.82
PPFIA3-213ENST00000602905 RTKN2Q8IZC4 609 aa20.19■□□□□ 0.82
PPFIA3-213ENST00000602905 SBF1O95248 1867 aa20.18■□□□□ 0.82
PPFIA3-213ENST00000602905 YY1P25490 414 aa20.18■□□□□ 0.82
PPFIA3-213ENST00000602905 TTLL11Q8NHH1 800 aa20.18■□□□□ 0.82
PPFIA3-213ENST00000602905 C7orf43Q8WVR3 580 aa20.18■□□□□ 0.82
PPFIA3-213ENST00000602905 CCDC85AQ96PX6 553 aaPredicted RBP20.18■□□□□ 0.82
PPFIA3-213ENST00000602905 CDC5LQ99459 802 aaKnown RBP20.17■□□□□ 0.82
PPFIA3-213ENST00000602905 TAOK3Q9H2K8 898 aa20.17■□□□□ 0.82
PPFIA3-213ENST00000602905 RCAN3Q9UKA8 241 aa20.17■□□□□ 0.82
PPFIA3-213ENST00000602905 HDAC5Q9UQL6 1122 aa20.17■□□□□ 0.82
PPFIA3-213ENST00000602905 TRIM27P14373 513 aa20.16■□□□□ 0.82
PPFIA3-213ENST00000602905 RPS8P62241 208 aaKnown RBP20.16■□□□□ 0.82
PPFIA3-213ENST00000602905 SP8Q8IXZ3 490 aa20.16■□□□□ 0.82
PPFIA3-213ENST00000602905 FTSJ3Q8IY81 847 aaKnown RBP20.16■□□□□ 0.82
PPFIA3-213ENST00000602905 CHMP3Q9Y3E7 222 aa20.16■□□□□ 0.82
PPFIA3-213ENST00000602905 ATP6V0A2Q9Y487 856 aa20.16■□□□□ 0.82
PPFIA3-213ENST00000602905 LMNB1P20700 586 aa20.15■□□□□ 0.82
PPFIA3-213ENST00000602905 RASSF7Q02833 373 aa20.15■□□□□ 0.82
PPFIA3-213ENST00000602905 ANKRD18AQ8IVF6 992 aa20.15■□□□□ 0.82
PPFIA3-213ENST00000602905 CELF1Q92879 486 aaKnown RBP20.15■□□□□ 0.82
PPFIA3-213ENST00000602905 CLUAP1Q96AJ1 413 aa20.15■□□□□ 0.82
PPFIA3-213ENST00000602905 UTYO14607 1347 aa20.15■□□□□ 0.82
PPFIA3-213ENST00000602905 LTBP3Q9NS15 1303 aa20.15■□□□□ 0.82
PPFIA3-213ENST00000602905 RTL9Q8NET4 1388 aa20.14■□□□□ 0.81
PPFIA3-213ENST00000602905 NBPF7P0C2Y1 421 aaPredicted RBP20.14■□□□□ 0.81
PPFIA3-213ENST00000602905 MS4A1P11836 297 aa20.14■□□□□ 0.81
PPFIA3-213ENST00000602905 FKBP4Q02790 459 aaKnown RBP eCLIP20.14■□□□□ 0.81
PPFIA3-213ENST00000602905 INTS3Q68E01 1043 aaKnown RBP20.14■□□□□ 0.81
PPFIA3-213ENST00000602905 GREM2Q9H772 168 aa20.14■□□□□ 0.81
PPFIA3-213ENST00000602905 SEC31BQ9NQW1 1179 aa20.14■□□□□ 0.81
PPFIA3-213ENST00000602905 RNF181Q9P0P0 153 aa20.14■□□□□ 0.81
PPFIA3-213ENST00000602905 UTRNP46939 3433 aa20.14■□□□□ 0.81
PPFIA3-213ENST00000602905 NFKBIEO00221 500 aa20.13■□□□□ 0.81
PPFIA3-213ENST00000602905 CSF1RP07333 972 aa20.13■□□□□ 0.81
PPFIA3-213ENST00000602905 IGHMBP2P38935 993 aaKnown RBP20.13■□□□□ 0.81
PPFIA3-213ENST00000602905 C9orf131Q5VYM1 1079 aa20.13■□□□□ 0.81
PPFIA3-213ENST00000602905 OLFM4Q6UX06 510 aa20.13■□□□□ 0.81
PPFIA3-213ENST00000602905 USP44Q9H0E7 712 aa20.13■□□□□ 0.81
PPFIA3-213ENST00000602905 DICER1Q9UPY3 1922 aaKnown RBP20.13■□□□□ 0.81
PPFIA3-213ENST00000602905 SPEF2Q9C093 1822 aa20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 ANKRD18BA2A2Z9 1011 aa20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 UBTFL1P0CB47 393 aaPredicted RBP20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 FOXO4P98177 505 aa20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 IFIT5Q13325 482 aaKnown RBP20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 LMBR1LQ6UX01 489 aa20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 DZIP1LQ8IYY4 767 aaKnown RBP20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 MPNDQ8N594 471 aa20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 SUPT20HQ8NEM7 779 aa20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 SUCLG2Q96I99 432 aa20.12■□□□□ 0.81
PPFIA3-213ENST00000602905 ITGA6P23229 1130 aa20.11■□□□□ 0.81
PPFIA3-213ENST00000602905 CCDC57Q2TAC2 916 aa20.11■□□□□ 0.81
PPFIA3-213ENST00000602905 FAM161AQ3B820 660 aa20.11■□□□□ 0.81
PPFIA3-213ENST00000602905 TAF7LQ5H9L4 462 aa20.11■□□□□ 0.81
PPFIA3-213ENST00000602905 DPP8Q6V1X1 898 aaPredicted RBP20.11■□□□□ 0.81
PPFIA3-213ENST00000602905 PSMD1Q99460 953 aa20.11■□□□□ 0.81
PPFIA3-213ENST00000602905 GNAI3P08754 354 aa20.1■□□□□ 0.81
PPFIA3-213ENST00000602905 MPHOSPH8Q99549 860 aa20.1■□□□□ 0.81
PPFIA3-213ENST00000602905 EPHA10Q5JZY3 1008 aa20.09■□□□□ 0.81
PPFIA3-213ENST00000602905 TNNQ9UQP3 1299 aa20.09■□□□□ 0.81
PPFIA3-213ENST00000602905 LRRC37AA6NMS7 1700 aa20.09■□□□□ 0.81
PPFIA3-213ENST00000602905 TMEM57Q8N5G2 664 aa20.08■□□□□ 0.81
PPFIA3-213ENST00000602905 BICC1Q9H694 974 aaKnown RBP20.08■□□□□ 0.81
PPFIA3-213ENST00000602905 ZNF277Q9NRM2 450 aaPredicted RBP20.08■□□□□ 0.81
PPFIA3-213ENST00000602905 BSDC1Q9NW68 430 aaPredicted RBP20.08■□□□□ 0.81
PPFIA3-213ENST00000602905 NSFL1CQ9UNZ2 370 aaKnown RBP20.08■□□□□ 0.81
PPFIA3-213ENST00000602905 IARSP41252 1262 aaKnown RBP20.07■□□□□ 0.8
PPFIA3-213ENST00000602905 ANKIB1Q9P2G1 1089 aa20.07■□□□□ 0.8
PPFIA3-213ENST00000602905 ZC3H4Q9UPT8 1303 aaKnown RBP20.06■□□□□ 0.8
PPFIA3-213ENST00000602905 TIAM2Q8IVF5 1701 aa20.06■□□□□ 0.8
PPFIA3-213ENST00000602905 ITPRIPQ8IWB1 547 aa20.06■□□□□ 0.8
PPFIA3-213ENST00000602905 MEIS3Q99687 375 aa20.06■□□□□ 0.8
PPFIA3-213ENST00000602905 VPS33BQ9H267 617 aa20.06■□□□□ 0.8
PPFIA3-213ENST00000602905 SNED1Q8TER0 1413 aa20.05■□□□□ 0.8
PPFIA3-213ENST00000602905 RABL6Q3YEC7 729 aaPredicted RBP20.05■□□□□ 0.8
PPFIA3-213ENST00000602905 JDP2Q8WYK2 163 aa20.05■□□□□ 0.8
PPFIA3-213ENST00000602905 KAZALD1Q96I82 304 aa20.05■□□□□ 0.8
PPFIA3-213ENST00000602905 RTFDC1Q9BY42 306 aaPredicted RBP20.05■□□□□ 0.8
PPFIA3-213ENST00000602905 COL4A1P02462 1669 aa20.04■□□□□ 0.8
PPFIA3-213ENST00000602905 C6orf229H3BNL8 230 aa20.04■□□□□ 0.8
PPFIA3-213ENST00000602905 PPIP5K2O43314 1243 aa20.04■□□□□ 0.8
PPFIA3-213ENST00000602905 GPSM2P81274 684 aa20.04■□□□□ 0.8
PPFIA3-213ENST00000602905 LARGE2Q8N3Y3 721 aa20.04■□□□□ 0.8
PPFIA3-213ENST00000602905 EYA3Q99504 573 aa20.04■□□□□ 0.8
PPFIA3-213ENST00000602905 LRRFIP2Q9Y608 721 aaKnown RBP20.04■□□□□ 0.8
PPFIA3-213ENST00000602905 XDHP47989 1333 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms