RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 JMYQ8N9B5 988 aa20.37■□□□□ 0.85
VRK3-221ENST00000600284 ZBTB38Q8NAP3 1195 aaPredicted RBP20.37■□□□□ 0.85
VRK3-221ENST00000600284 CCDC191Q8NCU4 936 aa20.37■□□□□ 0.85
VRK3-221ENST00000600284 IRS4O14654 1257 aaPredicted RBP20.36■□□□□ 0.85
VRK3-221ENST00000600284 PPIP5K2O43314 1243 aa20.36■□□□□ 0.85
VRK3-221ENST00000600284 SLC51AQ86UW1 340 aa20.36■□□□□ 0.85
VRK3-221ENST00000600284 TSR2Q969E8 191 aaKnown RBP20.36■□□□□ 0.85
VRK3-221ENST00000600284 LAMB2P55268 1798 aa20.36■□□□□ 0.85
VRK3-221ENST00000600284 MYD88Q99836 296 aa20.35■□□□□ 0.85
VRK3-221ENST00000600284 METTL22Q9BUU2 404 aaPredicted RBP20.35■□□□□ 0.85
VRK3-221ENST00000600284 STK31Q9BXU1 1019 aa20.35■□□□□ 0.85
VRK3-221ENST00000600284 COL4A5P29400 1685 aa20.35■□□□□ 0.85
VRK3-221ENST00000600284 AOC3Q16853 763 aa20.34■□□□□ 0.85
VRK3-221ENST00000600284 WDR63Q8IWG1 891 aa20.34■□□□□ 0.85
VRK3-221ENST00000600284 ZNF428Q96B54 188 aa20.34■□□□□ 0.85
VRK3-221ENST00000600284 ZNRF3Q9ULT6 936 aa20.34■□□□□ 0.85
VRK3-221ENST00000600284 GJA3Q9Y6H8 435 aa20.34■□□□□ 0.85
VRK3-221ENST00000600284 PCCAP05165 728 aaPredicted RBP20.33■□□□□ 0.85
VRK3-221ENST00000600284 LMOD1P29536 600 aaPredicted RBP20.33■□□□□ 0.85
VRK3-221ENST00000600284 KIAA2012Q0VF49 1180 aa20.33■□□□□ 0.85
VRK3-221ENST00000600284 TWISTNBQ3B726 338 aaPredicted RBP20.33■□□□□ 0.85
VRK3-221ENST00000600284 EAPPQ56P03 285 aaPredicted RBP20.33■□□□□ 0.85
VRK3-221ENST00000600284 KSR2Q6VAB6 950 aa20.33■□□□□ 0.85
VRK3-221ENST00000600284 CREBZFQ9NS37 354 aa20.33■□□□□ 0.85
VRK3-221ENST00000600284 CWC25Q9NXE8 425 aaPredicted RBP20.33■□□□□ 0.85
VRK3-221ENST00000600284 DDX60Q8IY21 1712 aaKnown RBP20.33■□□□□ 0.84
VRK3-221ENST00000600284 RTL5Q5HYW3 569 aaPredicted RBP20.32■□□□□ 0.84
VRK3-221ENST00000600284 CELF1Q92879 486 aaKnown RBP20.32■□□□□ 0.84
VRK3-221ENST00000600284 PASKQ96RG2 1323 aa20.31■□□□□ 0.84
VRK3-221ENST00000600284 CLEC11AQ9Y240 323 aa20.31■□□□□ 0.84
VRK3-221ENST00000600284 MAP3K2Q9Y2U5 619 aa20.31■□□□□ 0.84
VRK3-221ENST00000600284 PI4KAP2A4QPH2 592 aa20.3■□□□□ 0.84
VRK3-221ENST00000600284 PDE8AO60658 829 aa20.3■□□□□ 0.84
VRK3-221ENST00000600284 ITGBL1O95965 494 aaPredicted RBP20.3■□□□□ 0.84
VRK3-221ENST00000600284 SCNN1DP51172 638 aa20.3■□□□□ 0.84
VRK3-221ENST00000600284 RPS8P62241 208 aaKnown RBP20.3■□□□□ 0.84
VRK3-221ENST00000600284 PI4KAP1Q8N8J0 262 aa20.3■□□□□ 0.84
VRK3-221ENST00000600284 SLC4A2P04920 1241 aa20.29■□□□□ 0.84
VRK3-221ENST00000600284 CXCL9Q07325 125 aa20.29■□□□□ 0.84
VRK3-221ENST00000600284 NEXNQ0ZGT2 675 aa20.29■□□□□ 0.84
VRK3-221ENST00000600284 USP50Q70EL3 339 aaPredicted RBP20.29■□□□□ 0.84
VRK3-221ENST00000600284 EPS15P42566 896 aa20.28■□□□□ 0.84
VRK3-221ENST00000600284 TNIP1Q15025 636 aa20.28■□□□□ 0.84
VRK3-221ENST00000600284 CCDC152Q4G0S7 254 aa20.28■□□□□ 0.84
VRK3-221ENST00000600284 NSFL1CQ9UNZ2 370 aaKnown RBP20.28■□□□□ 0.84
VRK3-221ENST00000600284 ADAMTSL1Q8N6G6 1762 aa20.28■□□□□ 0.84
VRK3-221ENST00000600284 CDHR2Q9BYE9 1310 aa20.27■□□□□ 0.84
VRK3-221ENST00000600284 FANCIQ9NVI1 1328 aa20.27■□□□□ 0.84
VRK3-221ENST00000600284 WASHC4Q2M389 1173 aa20.27■□□□□ 0.84
VRK3-221ENST00000600284 CIAPIN1Q6FI81 312 aa20.27■□□□□ 0.84
VRK3-221ENST00000600284 CNTROBQ8N137 903 aa20.27■□□□□ 0.84
VRK3-221ENST00000600284 LRRC37AA6NMS7 1700 aa20.27■□□□□ 0.83
VRK3-221ENST00000600284 IGKV5-2P06315 115 aa20.26■□□□□ 0.83
VRK3-221ENST00000600284 EYA3Q99504 573 aa20.26■□□□□ 0.83
VRK3-221ENST00000600284 GPRC5DQ9NZD1 345 aa20.26■□□□□ 0.83
VRK3-221ENST00000600284 TAF1P21675 1872 aa20.26■□□□□ 0.83
VRK3-221ENST00000600284 TMEM88BA6NKF7 163 aa20.25■□□□□ 0.83
VRK3-221ENST00000600284 VAMP4O75379 141 aa20.25■□□□□ 0.83
VRK3-221ENST00000600284 GPSM2P81274 684 aa20.25■□□□□ 0.83
VRK3-221ENST00000600284 SEC31BQ9NQW1 1179 aa20.25■□□□□ 0.83
VRK3-221ENST00000600284 ADARB2Q9NS39 739 aaKnown RBP20.25■□□□□ 0.83
VRK3-221ENST00000600284 PODXL2Q9NZ53 605 aa20.25■□□□□ 0.83
VRK3-221ENST00000600284 POLLQ9UGP5 575 aa20.25■□□□□ 0.83
VRK3-221ENST00000600284 SALL2Q9Y467 1007 aaPredicted RBP20.25■□□□□ 0.83
VRK3-221ENST00000600284 MAP1SQ66K74 1059 aaPredicted RBP20.24■□□□□ 0.83
VRK3-221ENST00000600284 G2E3Q7L622 706 aa20.24■□□□□ 0.83
VRK3-221ENST00000600284 FAM9BQ8IZU0 186 aa20.24■□□□□ 0.83
VRK3-221ENST00000600284 DUOX1Q9NRD9 1551 aa20.24■□□□□ 0.83
VRK3-221ENST00000600284 NEURL1BA8MQ27 555 aa20.23■□□□□ 0.83
VRK3-221ENST00000600284 C6orf229H3BNL8 230 aa20.23■□□□□ 0.83
VRK3-221ENST00000600284 FLIIQ13045 1269 aa20.23■□□□□ 0.83
VRK3-221ENST00000600284 LTBP1Q14766 1721 aa20.23■□□□□ 0.83
VRK3-221ENST00000600284 TBC1D16Q8TBP0 767 aa20.23■□□□□ 0.83
VRK3-221ENST00000600284 MYH16Q9H6N6 1097 aa20.23■□□□□ 0.83
VRK3-221ENST00000600284 YDJCA8MPS7 323 aa20.22■□□□□ 0.83
VRK3-221ENST00000600284 RAD17O75943 681 aa20.22■□□□□ 0.83
VRK3-221ENST00000600284 GMPSP49915 693 aaPredicted RBP20.22■□□□□ 0.83
VRK3-221ENST00000600284 JARID2Q92833 1246 aaPredicted RBP20.22■□□□□ 0.83
VRK3-221ENST00000600284 BCL2L13Q9BXK5 485 aa20.22■□□□□ 0.83
VRK3-221ENST00000600284 H7C1W4 665 aa20.21■□□□□ 0.83
VRK3-221ENST00000600284 CTSWP56202 376 aa20.21■□□□□ 0.83
VRK3-221ENST00000600284 EXOSC9Q06265 439 aaKnown RBP20.21■□□□□ 0.83
VRK3-221ENST00000600284 CWF19L2Q2TBE0 894 aaKnown RBP20.21■□□□□ 0.83
VRK3-221ENST00000600284 IFFO2Q5TF58 517 aa20.21■□□□□ 0.83
VRK3-221ENST00000600284 ANKRD18AQ8IVF6 992 aa20.21■□□□□ 0.83
VRK3-221ENST00000600284 CNTNAP1P78357 1384 aa20.21■□□□□ 0.83
VRK3-221ENST00000600284 FKBP5Q13451 457 aaPredicted RBP20.2■□□□□ 0.82
VRK3-221ENST00000600284 TTLL11Q8NHH1 800 aa20.2■□□□□ 0.82
VRK3-221ENST00000600284 DNAAF4Q8WXU2 420 aa20.2■□□□□ 0.82
VRK3-221ENST00000600284 DPF2Q92785 391 aa20.2■□□□□ 0.82
VRK3-221ENST00000600284 CDC5LQ99459 802 aaKnown RBP20.2■□□□□ 0.82
VRK3-221ENST00000600284 ZC3H12CQ9C0D7 883 aaKnown RBP20.2■□□□□ 0.82
VRK3-221ENST00000600284 ANKIB1Q9P2G1 1089 aa20.2■□□□□ 0.82
VRK3-221ENST00000600284 MKRN1Q9UHC7 482 aaKnown RBP20.2■□□□□ 0.82
VRK3-221ENST00000600284 COL4A1P02462 1669 aa20.19■□□□□ 0.82
VRK3-221ENST00000600284 RIMBP2O15034 1052 aa20.19■□□□□ 0.82
VRK3-221ENST00000600284 GCKRQ14397 625 aa20.19■□□□□ 0.82
VRK3-221ENST00000600284 LINS1Q8NG48 757 aa20.19■□□□□ 0.82
VRK3-221ENST00000600284 ZC3H15Q8WU90 426 aaKnown RBP20.19■□□□□ 0.82
VRK3-221ENST00000600284 PGAP2Q9UHJ9 254 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms