RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 LMNB1P20700 586 aa19.31■□□□□ 0.68
LIG1-219ENST00000600055 CELF1Q92879 486 aaKnown RBP19.31■□□□□ 0.68
LIG1-219ENST00000600055 SRCIN1Q9C0H9 1055 aa19.31■□□□□ 0.68
LIG1-219ENST00000600055 SEC31BQ9NQW1 1179 aa19.31■□□□□ 0.68
LIG1-219ENST00000600055 COL4A1P02462 1669 aa19.3■□□□□ 0.68
LIG1-219ENST00000600055 BBOX1O75936 387 aa19.3■□□□□ 0.68
LIG1-219ENST00000600055 BRPF1P55201 1214 aaPredicted RBP19.3■□□□□ 0.68
LIG1-219ENST00000600055 CTSWP56202 376 aa19.3■□□□□ 0.68
LIG1-219ENST00000600055 ATP6V0A2Q9Y487 856 aa19.3■□□□□ 0.68
LIG1-219ENST00000600055 LTBP3Q9NS15 1303 aa19.29■□□□□ 0.68
LIG1-219ENST00000600055 SNED1Q8TER0 1413 aa19.29■□□□□ 0.68
LIG1-219ENST00000600055 BCAR3O75815 825 aa19.29■□□□□ 0.68
LIG1-219ENST00000600055 ALDH1L1O75891 902 aa19.29■□□□□ 0.68
LIG1-219ENST00000600055 FKBP4Q02790 459 aaKnown RBP eCLIP19.29■□□□□ 0.68
LIG1-219ENST00000600055 CCDC152Q4G0S7 254 aa19.29■□□□□ 0.68
LIG1-219ENST00000600055 RTKN2Q8IZC4 609 aa19.29■□□□□ 0.68
LIG1-219ENST00000600055 TTLL11Q8NHH1 800 aa19.29■□□□□ 0.68
LIG1-219ENST00000600055 FER1L6Q2WGJ9 1857 aa19.28■□□□□ 0.68
LIG1-219ENST00000600055 CC2D2BQ6DHV5 1058 aa19.28■□□□□ 0.68
LIG1-219ENST00000600055 ZNF526Q8TF50 670 aaPredicted RBP19.28■□□□□ 0.68
LIG1-219ENST00000600055 ZNF277Q9NRM2 450 aaPredicted RBP19.28■□□□□ 0.68
LIG1-219ENST00000600055 TAF1P21675 1872 aa19.27■□□□□ 0.68
LIG1-219ENST00000600055 GRM8O00222 908 aa19.27■□□□□ 0.68
LIG1-219ENST00000600055 SP8Q8IXZ3 490 aa19.27■□□□□ 0.68
LIG1-219ENST00000600055 PLA2G12BQ9BX93 195 aa19.27■□□□□ 0.68
LIG1-219ENST00000600055 C9orf78Q9NZ63 289 aaPredicted RBP19.27■□□□□ 0.68
LIG1-219ENST00000600055 SBF1O95248 1867 aa19.26■□□□□ 0.67
LIG1-219ENST00000600055 RPS8P62241 208 aaKnown RBP19.26■□□□□ 0.67
LIG1-219ENST00000600055 GREM2Q9H772 168 aa19.26■□□□□ 0.67
LIG1-219ENST00000600055 EPHA10Q5JZY3 1008 aa19.25■□□□□ 0.67
LIG1-219ENST00000600055 PSMD1Q99460 953 aa19.25■□□□□ 0.67
LIG1-219ENST00000600055 NBPF7P0C2Y1 421 aaPredicted RBP19.24■□□□□ 0.67
LIG1-219ENST00000600055 FOXO4P98177 505 aa19.24■□□□□ 0.67
LIG1-219ENST00000600055 API5Q9BZZ5 524 aaKnown RBP19.24■□□□□ 0.67
LIG1-219ENST00000600055 TMX4Q9H1E5 349 aaPredicted RBP19.24■□□□□ 0.67
LIG1-219ENST00000600055 TNNQ9UQP3 1299 aa19.24■□□□□ 0.67
LIG1-219ENST00000600055 KIF16BQ96L93 1317 aa19.24■□□□□ 0.67
LIG1-219ENST00000600055 CSF1RP07333 972 aa19.23■□□□□ 0.67
LIG1-219ENST00000600055 FAM161AQ3B820 660 aa19.23■□□□□ 0.67
LIG1-219ENST00000600055 TMC4Q7Z404 712 aa19.23■□□□□ 0.67
LIG1-219ENST00000600055 MPNDQ8N594 471 aa19.23■□□□□ 0.67
LIG1-219ENST00000600055 FRAT1Q92837 279 aaPredicted RBP19.23■□□□□ 0.67
LIG1-219ENST00000600055 SUCLG2Q96I99 432 aa19.23■□□□□ 0.67
LIG1-219ENST00000600055 IARSP41252 1262 aaKnown RBP19.22■□□□□ 0.67
LIG1-219ENST00000600055 GRIPAP1Q4V328 841 aa19.22■□□□□ 0.67
LIG1-219ENST00000600055 DPP8Q6V1X1 898 aaPredicted RBP19.22■□□□□ 0.67
LIG1-219ENST00000600055 ANKRD18AQ8IVF6 992 aa19.22■□□□□ 0.67
LIG1-219ENST00000600055 UTYO14607 1347 aa19.22■□□□□ 0.67
LIG1-219ENST00000600055 RTL9Q8NET4 1388 aa19.21■□□□□ 0.67
LIG1-219ENST00000600055 ITGA6P23229 1130 aa19.21■□□□□ 0.67
LIG1-219ENST00000600055 GPSM2P81274 684 aa19.21■□□□□ 0.67
LIG1-219ENST00000600055 LMBR1LQ6UX01 489 aa19.21■□□□□ 0.67
LIG1-219ENST00000600055 ARHGAP45Q92619 1136 aa19.21■□□□□ 0.67
LIG1-219ENST00000600055 KAZALD1Q96I82 304 aa19.21■□□□□ 0.67
LIG1-219ENST00000600055 CDC5LQ99459 802 aaKnown RBP19.21■□□□□ 0.67
LIG1-219ENST00000600055 USP44Q9H0E7 712 aa19.21■□□□□ 0.67
LIG1-219ENST00000600055 GPBP1L1Q9HC44 474 aaPredicted RBP19.21■□□□□ 0.67
LIG1-219ENST00000600055 CCDC88AQ3V6T2 1871 aa19.2■□□□□ 0.66
LIG1-219ENST00000600055 TRIM27P14373 513 aa19.2■□□□□ 0.66
LIG1-219ENST00000600055 CCT4P50991 539 aaKnown RBP19.2■□□□□ 0.66
LIG1-219ENST00000600055 RTFDC1Q9BY42 306 aaPredicted RBP19.2■□□□□ 0.66
LIG1-219ENST00000600055 NSFL1CQ9UNZ2 370 aaKnown RBP19.2■□□□□ 0.66
LIG1-219ENST00000600055 CHMP3Q9Y3E7 222 aa19.2■□□□□ 0.66
LIG1-219ENST00000600055 YTHDC1Q96MU7 727 aaKnown RBP19.19■□□□□ 0.66
LIG1-219ENST00000600055 ZC3H4Q9UPT8 1303 aaKnown RBP19.19■□□□□ 0.66
LIG1-219ENST00000600055 COL4A5P29400 1685 aa19.18■□□□□ 0.66
LIG1-219ENST00000600055 TIAM2Q8IVF5 1701 aa19.18■□□□□ 0.66
LIG1-219ENST00000600055 IPO8O15397 1037 aaKnown RBP19.18■□□□□ 0.66
LIG1-219ENST00000600055 AOC3Q16853 763 aa19.18■□□□□ 0.66
LIG1-219ENST00000600055 ATF7IPQ6VMQ6 1270 aa19.18■□□□□ 0.66
LIG1-219ENST00000600055 LARGE2Q8N3Y3 721 aa19.18■□□□□ 0.66
LIG1-219ENST00000600055 CLUAP1Q96AJ1 413 aa19.18■□□□□ 0.66
LIG1-219ENST00000600055 NMRK2Q9NPI5 230 aa19.18■□□□□ 0.66
LIG1-219ENST00000600055 POLLQ9UGP5 575 aa19.18■□□□□ 0.66
LIG1-219ENST00000600055 MYH3P11055 1940 aa19.17■□□□□ 0.66
LIG1-219ENST00000600055 LRRC37AA6NMS7 1700 aa19.17■□□□□ 0.66
LIG1-219ENST00000600055 ANKRD18BA2A2Z9 1011 aa19.17■□□□□ 0.66
LIG1-219ENST00000600055 GLTPD2A6NH11 291 aa19.17■□□□□ 0.66
LIG1-219ENST00000600055 PPIP5K2O43314 1243 aa19.17■□□□□ 0.66
LIG1-219ENST00000600055 SUPT20HQ8NEM7 779 aa19.17■□□□□ 0.66
LIG1-219ENST00000600055 GPR101Q96P66 508 aaPredicted RBP19.17■□□□□ 0.66
LIG1-219ENST00000600055 BICC1Q9H694 974 aaKnown RBP19.17■□□□□ 0.66
LIG1-219ENST00000600055 BSDC1Q9NW68 430 aaPredicted RBP19.17■□□□□ 0.66
LIG1-219ENST00000600055 DUOX1Q9NRD9 1551 aa19.17■□□□□ 0.66
LIG1-219ENST00000600055 IGHMBP2P38935 993 aaKnown RBP19.16■□□□□ 0.66
LIG1-219ENST00000600055 IFIT5Q13325 482 aaKnown RBP19.16■□□□□ 0.66
LIG1-219ENST00000600055 ZKSCAN2Q63HK3 967 aa19.16■□□□□ 0.66
LIG1-219ENST00000600055 ANKRD44Q8N8A2 993 aa19.16■□□□□ 0.66
LIG1-219ENST00000600055 ANKIB1Q9P2G1 1089 aa19.16■□□□□ 0.66
LIG1-219ENST00000600055 MINPP1Q9UNW1 487 aa19.16■□□□□ 0.66
LIG1-219ENST00000600055 ZNF541Q9H0D2 1346 aa19.16■□□□□ 0.66
LIG1-219ENST00000600055 C6orf229H3BNL8 230 aa19.15■□□□□ 0.66
LIG1-219ENST00000600055 DDNO94850 711 aaPredicted RBP19.15■□□□□ 0.66
LIG1-219ENST00000600055 INTS3Q68E01 1043 aaKnown RBP19.15■□□□□ 0.66
LIG1-219ENST00000600055 TBC1D16Q8TBP0 767 aa19.15■□□□□ 0.66
LIG1-219ENST00000600055 JDP2Q8WYK2 163 aa19.15■□□□□ 0.66
LIG1-219ENST00000600055 ZNF594Q96JF6 807 aaPredicted RBP19.15■□□□□ 0.66
LIG1-219ENST00000600055 PODXL2Q9NZ53 605 aa19.15■□□□□ 0.66
LIG1-219ENST00000600055 KDM2BQ8NHM5 1336 aa19.15■□□□□ 0.66
LIG1-219ENST00000600055 DICER1Q9UPY3 1922 aaKnown RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms