RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LRP10Q7Z4F1 713 aa11.42□□□□□ -0.58
SHKBP1-220ENST00000599716 SLC17A8Q8NDX2 589 aa11.42□□□□□ -0.58
SHKBP1-220ENST00000599716 RBM17Q96I25 401 aaKnown RBP11.42□□□□□ -0.58
SHKBP1-220ENST00000599716 TSPYL4Q9UJ04 414 aa11.42□□□□□ -0.58
SHKBP1-220ENST00000599716 RIC1Q4ADV7 1423 aa11.42□□□□□ -0.58
SHKBP1-220ENST00000599716 ABCC4O15439 1325 aa11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 SHTN1A0MZ66 631 aa11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 RGL2O15211 777 aa11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 NEFMP07197 916 aa11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 HCLS1P14317 486 aaPredicted RBP11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 LMOD1P29536 600 aaPredicted RBP11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 CST9Q5W186 159 aa11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 DLK2Q6UY11 383 aa11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 GIGYF2Q6Y7W6 1299 aaKnown RBP11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 PNISRQ8TF01 805 aaKnown RBP11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 TLL2Q9Y6L7 1015 aa11.41□□□□□ -0.58
SHKBP1-220ENST00000599716 PITPNM2Q9BZ72 1349 aa11.4□□□□□ -0.58
SHKBP1-220ENST00000599716 MAPK8IP3Q9UPT6 1336 aa11.4□□□□□ -0.58
SHKBP1-220ENST00000599716 COL4A1P02462 1669 aa11.4□□□□□ -0.58
SHKBP1-220ENST00000599716 NIM1KQ8IY84 436 aa11.4□□□□□ -0.58
SHKBP1-220ENST00000599716 CRAMP1Q96RY5 1269 aa11.4□□□□□ -0.58
SHKBP1-220ENST00000599716 HTTP42858 3142 aa11.4□□□□□ -0.59
SHKBP1-220ENST00000599716 RAD17O75943 681 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 GMPSP49915 693 aaPredicted RBP11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 RIPK4P57078 832 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 CXCL9Q07325 125 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 NEUROD2Q15784 382 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 CC2D2BQ6DHV5 1058 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 CCDC146Q8IYE0 955 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 NLRP3Q96P20 1036 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 TRPM7Q96QT4 1865 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 UTP14AQ9BVJ6 771 aaKnown RBP11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 IBTKQ9P2D0 1353 aaPredicted RBP11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 CENPFP49454 3210 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 ANKRD36CQ5JPF3 1778 aa11.39□□□□□ -0.59
SHKBP1-220ENST00000599716 CIAPIN1Q6FI81 312 aa11.38□□□□□ -0.59
SHKBP1-220ENST00000599716 COPS6Q7L5N1 327 aa11.38□□□□□ -0.59
SHKBP1-220ENST00000599716 PPP1R42Q7Z4L9 355 aa11.38□□□□□ -0.59
SHKBP1-220ENST00000599716 XAGE3Q8WTP9 111 aa11.38□□□□□ -0.59
SHKBP1-220ENST00000599716 GLIS2Q9BZE0 524 aaPredicted RBP11.38□□□□□ -0.59
SHKBP1-220ENST00000599716 ZNF408Q9H9D4 720 aa11.38□□□□□ -0.59
SHKBP1-220ENST00000599716 GPRC5DQ9NZD1 345 aa11.38□□□□□ -0.59
SHKBP1-220ENST00000599716 ATP6V0A2Q9Y487 856 aa11.38□□□□□ -0.59
SHKBP1-220ENST00000599716 HIRAP54198 1017 aaPredicted RBP11.37□□□□□ -0.59
SHKBP1-220ENST00000599716 PARP10Q53GL7 1025 aa11.37□□□□□ -0.59
SHKBP1-220ENST00000599716 RTL5Q5HYW3 569 aaPredicted RBP11.37□□□□□ -0.59
SHKBP1-220ENST00000599716 NLRP10Q86W26 655 aa11.37□□□□□ -0.59
SHKBP1-220ENST00000599716 TRPM4Q8TD43 1214 aa11.37□□□□□ -0.59
SHKBP1-220ENST00000599716 HHIPL1Q96JK4 782 aa11.37□□□□□ -0.59
SHKBP1-220ENST00000599716 LAS1LQ9Y4W2 734 aaKnown RBP11.37□□□□□ -0.59
SHKBP1-220ENST00000599716 DUOX1Q9NRD9 1551 aa11.37□□□□□ -0.59
SHKBP1-220ENST00000599716 YDJCA8MPS7 323 aa11.36□□□□□ -0.59
SHKBP1-220ENST00000599716 CELF2O95319 508 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-220ENST00000599716 DPP8Q6V1X1 898 aaPredicted RBP11.36□□□□□ -0.59
SHKBP1-220ENST00000599716 USP50Q70EL3 339 aaPredicted RBP11.36□□□□□ -0.59
SHKBP1-220ENST00000599716 CTU1Q7Z7A3 348 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-220ENST00000599716 SAPCD2Q86UD0 394 aa11.36□□□□□ -0.59
SHKBP1-220ENST00000599716 ADARB2Q9NS39 739 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-220ENST00000599716 TRMT112Q9UI30 125 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-220ENST00000599716 ZBTB12Q9Y330 459 aaPredicted RBP11.36□□□□□ -0.59
SHKBP1-220ENST00000599716 DDX60Q8IY21 1712 aaKnown RBP11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 TMPOP42166 694 aaKnown RBP11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 NOGQ13253 232 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 SLC10A5Q5PT55 438 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 MPNDQ8N594 471 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 ZIC5Q96T25 663 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 BCL2L13Q9BXK5 485 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 SAGE1Q9NXZ1 904 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 CHPF2Q9P2E5 772 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 ZNRF3Q9ULT6 936 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 HPS5Q9UPZ3 1129 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 ERBB4Q15303 1308 aa11.35□□□□□ -0.59
SHKBP1-220ENST00000599716 ATP5J2-PTCD1G3V325 749 aa11.34□□□□□ -0.59
SHKBP1-220ENST00000599716 RIMBP2O15034 1052 aa11.34□□□□□ -0.59
SHKBP1-220ENST00000599716 EGFRP00533 1210 aa11.34□□□□□ -0.59
SHKBP1-220ENST00000599716 TMX4Q9H1E5 349 aaPredicted RBP11.34□□□□□ -0.59
SHKBP1-220ENST00000599716 DBNDD1Q9H9R9 158 aa11.34□□□□□ -0.59
SHKBP1-220ENST00000599716 KCNQ5Q9NR82 932 aa11.34□□□□□ -0.59
SHKBP1-220ENST00000599716 KIAA2012Q0VF49 1180 aa11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 TCIRG1Q13488 830 aa11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 GRAPQ13588 217 aa11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 DDX46Q7L014 1031 aaKnown RBP11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 SAMD7Q7Z3H4 446 aa11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 USP48Q86UV5 1035 aa11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 SP8Q8IXZ3 490 aa11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 GRAPLQ8TC17 118 aaPredicted RBP11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 CELF1Q92879 486 aaKnown RBP11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 FAM89AQ96GI7 184 aa11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 RTFDC1Q9BY42 306 aaPredicted RBP11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 SH3TC1Q8TE82 1336 aa11.33□□□□□ -0.6
SHKBP1-220ENST00000599716 SPTBN5Q9NRC6 3674 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 BBOX1O75936 387 aa11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 MNX1P50219 401 aaPredicted RBP11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 DOK7Q18PE1 504 aa11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 TBC1D10BQ4KMP7 808 aaPredicted RBP11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 GRIPAP1Q4V328 841 aa11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 RBM26Q5T8P6 1007 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 MICALL2Q8IY33 904 aa11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 JARID2Q92833 1246 aaPredicted RBP11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 CNOT7Q9UIV1 285 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms