RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 SLC27A3Q5K4L6 730 aa20.7■□□□□ 0.9
SHKBP1-216ENST00000598201 SYNE4Q8N205 404 aa20.7■□□□□ 0.9
SHKBP1-216ENST00000598201 EVI5LQ96CN4 794 aa20.7■□□□□ 0.9
SHKBP1-216ENST00000598201 LY75O60449 1722 aa20.7■□□□□ 0.9
SHKBP1-216ENST00000598201 IL6STP40189 918 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-216ENST00000598201 TBC1D2BQ9UPU7 963 aa20.69■□□□□ 0.9
SHKBP1-216ENST00000598201 INTS5Q6P9B9 1019 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-216ENST00000598201 NLRP10Q86W26 655 aa20.69■□□□□ 0.9
SHKBP1-216ENST00000598201 ZBTB38Q8NAP3 1195 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-216ENST00000598201 LRRC4BQ9NT99 713 aa20.69■□□□□ 0.9
SHKBP1-216ENST00000598201 CHMP5Q9NZZ3 219 aa20.69■□□□□ 0.9
SHKBP1-216ENST00000598201 ITPK1Q13572 414 aa20.68■□□□□ 0.9
SHKBP1-216ENST00000598201 DZIP3Q86Y13 1208 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-216ENST00000598201 FOXD4L1Q9NU39 408 aa20.68■□□□□ 0.9
SHKBP1-216ENST00000598201 LRRC24Q50LG9 513 aa20.68■□□□□ 0.9
SHKBP1-216ENST00000598201 DBNDD2Q9BQY9 259 aa20.68■□□□□ 0.9
SHKBP1-216ENST00000598201 LSG1Q9H089 658 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-216ENST00000598201 DIAPH3Q9NSV4 1193 aa20.68■□□□□ 0.9
SHKBP1-216ENST00000598201 RGPD3A6NKT7 1758 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-216ENST00000598201 RGPD4Q7Z3J3 1758 aa20.67■□□□□ 0.9
SHKBP1-216ENST00000598201 MCCP23508 829 aa20.67■□□□□ 0.9
SHKBP1-216ENST00000598201 CRKLP46109 303 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 EIF5P55010 431 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 PLA2G12BQ9BX93 195 aa20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 PUS3Q9BZE2 481 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 CCDC87Q9NVE4 849 aa20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 RAD50Q92878 1312 aa20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 EYA2O00167 538 aa20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 EPB41L2O43491 1005 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 HSP90AB3PQ58FF7 597 aa20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 CCDC85AQ96PX6 553 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-216ENST00000598201 ERVV-1B6SEH8 477 aa20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 SOCS7O14512 581 aa20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 ATP5JP18859 108 aa20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 HSPA4P34932 840 aa20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 IL15P40933 162 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 ANAPC15P60006 121 aa20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 IL17RAQ96F46 866 aa20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 EDC3Q96F86 508 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 ST18O60284 1047 aa20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 CSF1RP07333 972 aa20.65■□□□□ 0.9
SHKBP1-216ENST00000598201 HSP90AA1P07900 732 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-216ENST00000598201 NUP98P52948 1817 aa20.64■□□□□ 0.89
SHKBP1-216ENST00000598201 UBN2Q6ZU65 1347 aa20.64■□□□□ 0.89
SHKBP1-216ENST00000598201 CDHR2Q9BYE9 1310 aa20.64■□□□□ 0.89
SHKBP1-216ENST00000598201 ANKRD36CQ5JPF3 1778 aa20.63■□□□□ 0.89
SHKBP1-216ENST00000598201 NEK4P51957 841 aa20.63■□□□□ 0.89
SHKBP1-216ENST00000598201 CCDC57Q2TAC2 916 aa20.63■□□□□ 0.89
SHKBP1-216ENST00000598201 FAM227BQ96M60 508 aa20.63■□□□□ 0.89
SHKBP1-216ENST00000598201 NDUFB9Q9Y6M9 179 aa20.63■□□□□ 0.89
SHKBP1-216ENST00000598201 CIAO1O76071 339 aa20.63■□□□□ 0.89
SHKBP1-216ENST00000598201 TIMM10P62072 90 aa20.63■□□□□ 0.89
SHKBP1-216ENST00000598201 RUFY2Q8WXA3 655 aa20.63■□□□□ 0.89
SHKBP1-216ENST00000598201 ZNF831Q5JPB2 1677 aa20.63■□□□□ 0.89
SHKBP1-216ENST00000598201 HMGB2P26583 209 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 NMIQ13287 307 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 ZNF34Q8IZ26 560 aa20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 LINC00116Q8NCU8 138 aa20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 FSD1Q9BTV5 496 aa20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 MYH14Q7Z406 1995 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 PTH1RQ03431 593 aa20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 KIAA1211Q6ZU35 1233 aa20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 GPR108Q9NPR9 543 aa20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 TRMT112Q9UI30 125 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-216ENST00000598201 NEUROD6Q96NK8 337 aa20.61■□□□□ 0.89
SHKBP1-216ENST00000598201 RREB1Q92766 1687 aa20.6■□□□□ 0.89
SHKBP1-216ENST00000598201 TTLL11Q8NHH1 800 aa20.6■□□□□ 0.89
SHKBP1-216ENST00000598201 A0A0D9SFI3 127 aa20.6■□□□□ 0.89
SHKBP1-216ENST00000598201 HIP1O00291 1037 aa20.6■□□□□ 0.89
SHKBP1-216ENST00000598201 IRS4O14654 1257 aaPredicted RBP20.6■□□□□ 0.89
SHKBP1-216ENST00000598201 RASEFQ8IZ41 740 aa20.6■□□□□ 0.89
SHKBP1-216ENST00000598201 CIZ1Q9ULV3 898 aaPredicted RBP20.6■□□□□ 0.89
SHKBP1-216ENST00000598201 CICQ96RK0 1608 aaPredicted RBP20.6■□□□□ 0.89
SHKBP1-216ENST00000598201 ZNF609O15014 1411 aa20.59■□□□□ 0.89
SHKBP1-216ENST00000598201 CTSWP56202 376 aa20.59■□□□□ 0.89
SHKBP1-216ENST00000598201 IFIT5Q13325 482 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-216ENST00000598201 DNAJC2Q99543 621 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-216ENST00000598201 HAUS7Q99871 368 aa20.59■□□□□ 0.89
SHKBP1-216ENST00000598201 UPF3BQ9BZI7 483 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-216ENST00000598201 GREM2Q9H772 168 aa20.59■□□□□ 0.89
SHKBP1-216ENST00000598201 SNX14Q9Y5W7 946 aa20.59■□□□□ 0.89
SHKBP1-216ENST00000598201 CAMTA2O94983 1202 aa20.58■□□□□ 0.89
SHKBP1-216ENST00000598201 TAF1LQ8IZX4 1826 aa20.58■□□□□ 0.89
SHKBP1-216ENST00000598201 A0A1B0GUL7 405 aa20.58■□□□□ 0.88
SHKBP1-216ENST00000598201 CEP126Q9P2H0 1117 aa20.58■□□□□ 0.88
SHKBP1-216ENST00000598201 SNRKQ9NRH2 765 aa20.57■□□□□ 0.88
SHKBP1-216ENST00000598201 ITGA6P23229 1130 aa20.57■□□□□ 0.88
SHKBP1-216ENST00000598201 TAF7LQ5H9L4 462 aa20.57■□□□□ 0.88
SHKBP1-216ENST00000598201 RC3H1Q5TC82 1133 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-216ENST00000598201 SUSD4Q5VX71 490 aa20.57■□□□□ 0.88
SHKBP1-216ENST00000598201 FBXO3Q9UK99 471 aa20.57■□□□□ 0.88
SHKBP1-216ENST00000598201 CCDC171Q6TFL3 1326 aa20.56■□□□□ 0.88
SHKBP1-216ENST00000598201 COL5A3P25940 1745 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-216ENST00000598201 CHGBP05060 677 aa20.56■□□□□ 0.88
SHKBP1-216ENST00000598201 CNTNAP4Q9C0A0 1308 aa20.56■□□□□ 0.88
SHKBP1-216ENST00000598201 PDE8AO60658 829 aa20.55■□□□□ 0.88
SHKBP1-216ENST00000598201 RAB3GAP1Q15042 981 aa20.55■□□□□ 0.88
SHKBP1-216ENST00000598201 DDX46Q7L014 1031 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-216ENST00000598201 AK7Q96M32 723 aa20.55■□□□□ 0.88
SHKBP1-216ENST00000598201 MED23Q9ULK4 1368 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms