RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 SH3TC1Q8TE82 1336 aa16.36■□□□□ 0.21
TRIM28-212ENST00000597995 CDHR2Q9BYE9 1310 aa16.36■□□□□ 0.21
TRIM28-212ENST00000597995 ANKRD36CQ5JPF3 1778 aa16.36■□□□□ 0.21
TRIM28-212ENST00000597995 TRPM7Q96QT4 1865 aa16.35■□□□□ 0.21
TRIM28-212ENST00000597995 TRAF5O00463 557 aa16.35■□□□□ 0.21
TRIM28-212ENST00000597995 GRAPQ13588 217 aa16.35■□□□□ 0.21
TRIM28-212ENST00000597995 TNIP1Q15025 636 aa16.35■□□□□ 0.21
TRIM28-212ENST00000597995 CIAPIN1Q6FI81 312 aa16.35■□□□□ 0.21
TRIM28-212ENST00000597995 GRAPLQ8TC17 118 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-212ENST00000597995 GMPSP49915 693 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-212ENST00000597995 ZC3H15Q8WU90 426 aaKnown RBP16.34■□□□□ 0.21
TRIM28-212ENST00000597995 NECTIN2Q92692 538 aa16.34■□□□□ 0.21
TRIM28-212ENST00000597995 GPR101Q96P66 508 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-212ENST00000597995 HOXB7P09629 217 aa16.33■□□□□ 0.2
TRIM28-212ENST00000597995 MAP2K2P36507 400 aa16.33■□□□□ 0.2
TRIM28-212ENST00000597995 CYP4F22Q6NT55 531 aa16.33■□□□□ 0.2
TRIM28-212ENST00000597995 PAXIP1Q6ZW49 1069 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-212ENST00000597995 PLBD2Q8NHP8 589 aa16.33■□□□□ 0.2
TRIM28-212ENST00000597995 BEGAINQ9BUH8 593 aa16.33■□□□□ 0.2
TRIM28-212ENST00000597995 PRKRIP1Q9H875 184 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-212ENST00000597995 LAMB2P55268 1798 aa16.33■□□□□ 0.2
TRIM28-212ENST00000597995 SAPCD2Q86UD0 394 aa16.32■□□□□ 0.2
TRIM28-212ENST00000597995 HHIPL1Q96JK4 782 aa16.32■□□□□ 0.2
TRIM28-212ENST00000597995 BCL2L13Q9BXK5 485 aa16.32■□□□□ 0.2
TRIM28-212ENST00000597995 THSD7BQ9C0I4 1608 aa16.32■□□□□ 0.2
TRIM28-212ENST00000597995 RAD17O75943 681 aa16.31■□□□□ 0.2
TRIM28-212ENST00000597995 SF3B3Q15393 1217 aaKnown RBP16.31■□□□□ 0.2
TRIM28-212ENST00000597995 NEUROD2Q15784 382 aa16.31■□□□□ 0.2
TRIM28-212ENST00000597995 KRT24Q2M2I5 525 aa16.31■□□□□ 0.2
TRIM28-212ENST00000597995 ANKRD13DQ6ZTN6 518 aa16.31■□□□□ 0.2
TRIM28-212ENST00000597995 RUNDC1Q96C34 613 aa16.31■□□□□ 0.2
TRIM28-212ENST00000597995 ISCA1Q9BUE6 129 aa16.31■□□□□ 0.2
TRIM28-212ENST00000597995 CHPF2Q9P2E5 772 aa16.31■□□□□ 0.2
TRIM28-212ENST00000597995 TRIM35Q9UPQ4 493 aa16.31■□□□□ 0.2
TRIM28-212ENST00000597995 H7C1D1 291 aa16.3■□□□□ 0.2
TRIM28-212ENST00000597995 CELF2O95319 508 aaKnown RBP16.3■□□□□ 0.2
TRIM28-212ENST00000597995 ZEB1P37275 1124 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-212ENST00000597995 HIRAP54198 1017 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-212ENST00000597995 HDGFL1Q5TGJ6 251 aa16.3■□□□□ 0.2
TRIM28-212ENST00000597995 CDC37L1Q7L3B6 337 aa16.3■□□□□ 0.2
TRIM28-212ENST00000597995 ABHD8Q96I13 439 aa16.3■□□□□ 0.2
TRIM28-212ENST00000597995 GLIS2Q9BZE0 524 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-212ENST00000597995 DBF4Q9UBU7 674 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-212ENST00000597995 CNOT7Q9UIV1 285 aaKnown RBP16.3■□□□□ 0.2
TRIM28-212ENST00000597995 YDJCA8MPS7 323 aa16.29■□□□□ 0.2
TRIM28-212ENST00000597995 GRM1Q13255 1194 aa16.29■□□□□ 0.2
TRIM28-212ENST00000597995 TRIM28Q13263 835 aaKnown RBP16.29■□□□□ 0.2
TRIM28-212ENST00000597995 CCDC146Q8IYE0 955 aa16.29■□□□□ 0.2
TRIM28-212ENST00000597995 DPF2Q92785 391 aa16.29■□□□□ 0.2
TRIM28-212ENST00000597995 LAS1LQ9Y4W2 734 aaKnown RBP16.29■□□□□ 0.2
TRIM28-212ENST00000597995 CA12O43570 354 aa16.28■□□□□ 0.2
TRIM28-212ENST00000597995 WASHC4Q2M389 1173 aa16.28■□□□□ 0.2
TRIM28-212ENST00000597995 HYPKQ9NX55 129 aa16.28■□□□□ 0.2
TRIM28-212ENST00000597995 ADAMTS8Q9UP79 889 aa16.28■□□□□ 0.2
TRIM28-212ENST00000597995 DUOX1Q9NRD9 1551 aa16.27■□□□□ 0.2
TRIM28-212ENST00000597995 AOC2O75106 756 aa16.27■□□□□ 0.2
TRIM28-212ENST00000597995 WDR43Q15061 677 aaKnown RBP eCLIP16.27■□□□□ 0.22e-6■■□□□ 11.4
TRIM28-212ENST00000597995 TRPM4Q8TD43 1214 aa16.27■□□□□ 0.2
TRIM28-212ENST00000597995 CELF1Q92879 486 aaKnown RBP16.27■□□□□ 0.2
TRIM28-212ENST00000597995 FAM89AQ96GI7 184 aa16.27■□□□□ 0.2
TRIM28-212ENST00000597995 CFAP44Q96MT7 982 aa16.27■□□□□ 0.2
TRIM28-212ENST00000597995 NSFL1CQ9UNZ2 370 aaKnown RBP16.27■□□□□ 0.2
TRIM28-212ENST00000597995 LRRC37AA6NMS7 1700 aa16.27■□□□□ 0.19
TRIM28-212ENST00000597995 TAF1P21675 1872 aa16.27■□□□□ 0.19
TRIM28-212ENST00000597995 ATP5J2-PTCD1G3V325 749 aa16.26■□□□□ 0.19
TRIM28-212ENST00000597995 DUSP27Q5VZP5 1158 aa16.26■□□□□ 0.19
TRIM28-212ENST00000597995 MICALL2Q8IY33 904 aa16.26■□□□□ 0.19
TRIM28-212ENST00000597995 DDX60Q8IY21 1712 aaKnown RBP16.25■□□□□ 0.19
TRIM28-212ENST00000597995 RPS12P25398 132 aaKnown RBP16.25■□□□□ 0.19
TRIM28-212ENST00000597995 BRPF1P55201 1214 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-212ENST00000597995 EYA3Q99504 573 aa16.25■□□□□ 0.19
TRIM28-212ENST00000597995 POLLQ9UGP5 575 aa16.25■□□□□ 0.19
TRIM28-212ENST00000597995 SHTN1A0MZ66 631 aa16.24■□□□□ 0.19
TRIM28-212ENST00000597995 C6orf229H3BNL8 230 aa16.24■□□□□ 0.19
TRIM28-212ENST00000597995 PSMD14O00487 310 aa16.24■□□□□ 0.19
TRIM28-212ENST00000597995 IRS4O14654 1257 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-212ENST00000597995 HSP90B1P14625 803 aaKnown RBP16.24■□□□□ 0.19
TRIM28-212ENST00000597995 RPS8P62241 208 aaKnown RBP16.24■□□□□ 0.19
TRIM28-212ENST00000597995 GPSM2P81274 684 aa16.24■□□□□ 0.19
TRIM28-212ENST00000597995 ZNF428Q96B54 188 aa16.24■□□□□ 0.19
TRIM28-212ENST00000597995 ZNF408Q9H9D4 720 aa16.24■□□□□ 0.19
TRIM28-212ENST00000597995 DBNDD1Q9H9R9 158 aa16.24■□□□□ 0.19
TRIM28-212ENST00000597995 ZBTB12Q9Y330 459 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-212ENST00000597995 NOGQ13253 232 aa16.23■□□□□ 0.19
TRIM28-212ENST00000597995 CCDC184Q52MB2 194 aa16.23■□□□□ 0.19
TRIM28-212ENST00000597995 USP48Q86UV5 1035 aa16.23■□□□□ 0.19
TRIM28-212ENST00000597995 ZBTB38Q8NAP3 1195 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-212ENST00000597995 RIMBP2O15034 1052 aa16.22■□□□□ 0.19
TRIM28-212ENST00000597995 ZNF853P0CG23 659 aa16.22■□□□□ 0.19
TRIM28-212ENST00000597995 SAMD7Q7Z3H4 446 aa16.22■□□□□ 0.19
TRIM28-212ENST00000597995 RIC3Q7Z5B4 369 aa16.22■□□□□ 0.19
TRIM28-212ENST00000597995 TBC1D16Q8TBP0 767 aa16.22■□□□□ 0.19
TRIM28-212ENST00000597995 MBIPQ9NS73 344 aa16.22■□□□□ 0.19
TRIM28-212ENST00000597995 PODXL2Q9NZ53 605 aa16.22■□□□□ 0.19
TRIM28-212ENST00000597995 ECE2O60344 883 aa16.21■□□□□ 0.19
TRIM28-212ENST00000597995 GOLGA2Q08379 1002 aa16.21■□□□□ 0.19
TRIM28-212ENST00000597995 RTL5Q5HYW3 569 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-212ENST00000597995 ZC3H12CQ9C0D7 883 aaKnown RBP16.21■□□□□ 0.19
TRIM28-212ENST00000597995 TSKSQ9UJT2 592 aa16.21■□□□□ 0.19
TRIM28-212ENST00000597995 ZNF316A6NFI3 1004 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms